5' -> 3' 沃森-克里克自动机接受项链

Benedek NagyEastern Mediterranean University, Famagusta and Eszterházy Károly Catholic University, Eger
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摘要

沃森-克里克(WK)有限自动机在代表 DNA 分子的沃森-克里克磁带上工作。它们有两个读取头。在 5'->3' WK 自动机中,读头以相反的物理方向移动并读取输入。在本文中,我们考虑的输入是项链,即代表环形 DNA 分子。在传感 5'->3' WK 自动机中,输入的计算在头相遇时完成。由于原始模型能够接受线性无上下文语言,我们在此研究的项链语言与该类语言有密切关系。在这里,我们在两种不同的接受模式下使用这些自动机。一方面,在弱接受模式中,头是在输入的任意点上不确定地开始的,就像项链是在不确定地选择的点上剪断的),如果输入被接受,它就是在被接受的项链语言中。这些语言可以看作是线性无上下文语言在循环移位运算下取其封闭性而得到的语言。另一方面,在强接受模式下,要求输入被接受后,从循环的每一点开始计算。这些语言可以看作是包含在线性语言中的最大循环移位封闭语言。我们将介绍一些基于 WKautomata 受限变体(如无状态变体或全终结变体)的层次结果。
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5' -> 3' Watson-Crick Automata accepting Necklaces
Watson-Crick (WK) finite automata work on a Watson-Crick tape representing a DNA molecule. They have two reading heads. In 5'->3' WK automata, the heads move and read the input in opposite physical directions. In this paper, we consider such inputs which are necklaces, i.e., they represent circular DNA molecules. In sensing 5'->3' WK automata, the computation on the input is finished when the heads meet. As the original model is capable of accepting the linear context-free languages, the necklace languages we are investigating here have strong relations to that class. Here, we use these automata in two different acceptance modes. On the one hand, in weak acceptance mode the heads are starting nondeterministically at any point of the input, like the necklace is cut at a nondeterministically chosen point), and if the input is accepted, it is in the accepted necklace language. These languages can be seen as the languages obtained from the linear context-free languages by taking their closure under cyclic shift operation. On the other hand, in strong acceptance mode, it is required that the input is accepted starting the heads in the computation from every point of the cycle. These languages can be seen as the maximal cyclic shift closed languages included in a linear language. On the other hand, as it will be shown, they have a kind of locally testable property. We present some hierarchy results based on restricted variants of the WK automata, such as stateless or all-final variants.
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