{"title":"有根和无根树状子网络的特征","authors":"Janosch Döcker, Simone Linz","doi":"arxiv-2408.17105","DOIUrl":null,"url":null,"abstract":"Rooted phylogenetic networks are used by biologists to infer and represent\ncomplex evolutionary relationships between species that cannot be accurately\nexplained by a phylogenetic tree. Tree-child networks are a particular class of\nrooted phylogenetic networks that has been extensively investigated in recent\nyears. In this paper, we give a novel characterisation of a tree-child network\n$\\mathcal{R}$ in terms of cherry-picking sequences that are sequences on the\nleaves of $\\mathcal{R}$ and reduce it to a single vertex by repeatedly applying\none of two reductions to its leaves. We show that our characterisation extends\nto unrooted tree-child networks which are mostly unexplored in the literature\nand, in turn, also offers a new approach to settling the computational\ncomplexity of deciding if an unrooted phylogenetic network can be oriented as a\nrooted tree-child network.","PeriodicalId":501044,"journal":{"name":"arXiv - QuanBio - Populations and Evolution","volume":"43 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-08-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Characterising rooted and unrooted tree-child networks\",\"authors\":\"Janosch Döcker, Simone Linz\",\"doi\":\"arxiv-2408.17105\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Rooted phylogenetic networks are used by biologists to infer and represent\\ncomplex evolutionary relationships between species that cannot be accurately\\nexplained by a phylogenetic tree. Tree-child networks are a particular class of\\nrooted phylogenetic networks that has been extensively investigated in recent\\nyears. In this paper, we give a novel characterisation of a tree-child network\\n$\\\\mathcal{R}$ in terms of cherry-picking sequences that are sequences on the\\nleaves of $\\\\mathcal{R}$ and reduce it to a single vertex by repeatedly applying\\none of two reductions to its leaves. We show that our characterisation extends\\nto unrooted tree-child networks which are mostly unexplored in the literature\\nand, in turn, also offers a new approach to settling the computational\\ncomplexity of deciding if an unrooted phylogenetic network can be oriented as a\\nrooted tree-child network.\",\"PeriodicalId\":501044,\"journal\":{\"name\":\"arXiv - QuanBio - Populations and Evolution\",\"volume\":\"43 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-08-30\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"arXiv - QuanBio - Populations and Evolution\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/arxiv-2408.17105\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - QuanBio - Populations and Evolution","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2408.17105","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Characterising rooted and unrooted tree-child networks
Rooted phylogenetic networks are used by biologists to infer and represent
complex evolutionary relationships between species that cannot be accurately
explained by a phylogenetic tree. Tree-child networks are a particular class of
rooted phylogenetic networks that has been extensively investigated in recent
years. In this paper, we give a novel characterisation of a tree-child network
$\mathcal{R}$ in terms of cherry-picking sequences that are sequences on the
leaves of $\mathcal{R}$ and reduce it to a single vertex by repeatedly applying
one of two reductions to its leaves. We show that our characterisation extends
to unrooted tree-child networks which are mostly unexplored in the literature
and, in turn, also offers a new approach to settling the computational
complexity of deciding if an unrooted phylogenetic network can be oriented as a
rooted tree-child network.