有机体新陈代谢一般理论尚未开发的力量

Marko Jusup, Michael R. Kearney
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摘要

生物的特殊之处在于它们如何管理物质、能量和熵。因此,生物体新陈代谢的一般理论应该用这三种货币来量化,同时捕捉它们在个体和环境之间流动的独特方式。我们认为,这样一种理论已经悄然出现--"动态能量预算"(DEB)理论--它将生物体概念化为一系列宏观化学反应,这些反应利用能量将食物转化为结构化的生物质和生物产品,同时产生熵。我们的研究表明,这种概念深深植根于热力学原理,在一小套生物学假设的帮助下,它是基本生态生理学现象的基础,其中最著名的是新陈代谢的四分之三幂缩放。基于该理论的亚细胞性质,我们揭示了将生物量粗粒化为定性不同、化学计量固定的池的生态进化相关性,这些池具有基于表面积-体积关系的隐式动态调节。我们还展示了被称为 "合成单元 "的通用酶和被称为 "成熟度 "的基于信息的状态变量如何捕捉生态和生理代谢相互作用之间的转变,以及由此带来的单细胞和多细胞代谢组织之间的转变。形式化理论框架使自然法则所施加的约束条件显性化,这反过来又能提出更好的研究假设,避免推理错误。DEB 理论独特地将热力学形式主义应用于生物体的新陈代谢,通过物质和能量的转化、熵的产生以及信息的交换将不同尺度的生物过程联系起来。我们提出了该理论如何为生命科学前沿的跨学科研究提供信息的方法。
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The untapped power of a general theory of organismal metabolism
What makes living things special is how they manage matter, energy, and entropy. A general theory of organismal metabolism should therefore be quantified in these three currencies while capturing the unique way they flow between individuals and their environments. We argue that such a theory has quietly arrived -- 'Dynamic Energy Budget' (DEB) theory -- which conceptualises organisms as a series of macrochemical reactions that use energy to transform food into structured biomass and bioproducts while producing entropy. We show that such conceptualisation is deeply rooted in thermodynamic principles and that, with the help of a small set of biological assumptions, it underpins the emergence of fundamental ecophysiological phenomena, most notably the three-quarter power scaling of metabolism. Building on the subcellular nature of the theory, we unveil the eco-evolutionary relevance of coarse-graining biomass into qualitatively distinct, stoichiometricially fixed pools with implicitly regulated dynamics based on surface area-volume relations. We also show how generalised enzymes called 'synthesising units' and an information-based state variable called 'maturity' capture transitions between ecological and physiological metabolic interactions, and thereby transitions between unicellular and multicellular metabolic organisation. Formal theoretical frameworks make the constraints imposed by the laws of nature explicit, which in turn leads to better research hypotheses and avoids errors in reasoning. DEB theory uniquely applies thermodynamic formalism to organismal metabolism, linking biological processes across different scales through the transformation of matter and energy, the production of entropy, and the exchange of information. We propose ways in which the theory can inform trans-disciplinary efforts at the frontiers of the life sciences.
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