Rasmus Kristoffer Pedersen, Christian Berrig, Tamás Tekeli, Gergely Röst, Viggo Andreasen
{"title":"所见即所得?-- 根据测试强度校正报告的发病率数据","authors":"Rasmus Kristoffer Pedersen, Christian Berrig, Tamás Tekeli, Gergely Röst, Viggo Andreasen","doi":"arxiv-2408.11524","DOIUrl":null,"url":null,"abstract":"During the COVID-19 pandemic, different types of non-pharmaceutical\ninterventions played an important role in the efforts to control outbreaks and\nto limit the spread of the SARS-CoV-2 virus. In certain countries, large-scale\nvoluntary testing of non-symptomatic individuals was done, with the aim of\nidentifying asymptomatic and pre-symptomatic infections as well as gauging the\nprevalence in the general population. In this work, we present a mathematical\nmodel, used to investigate the dynamics of both observed and unobserved\ninfections as a function of the rate of voluntary testing. The model indicate\nthat increasing the rate of testing causes the observed prevalence to increase,\ndespite a decrease in the true prevalence. For large testing rates, the\nobserved prevalence also decrease. The non-monotonicity of observed prevalence\nexplains some of the discrepancies seen when comparing uncorrected case-counts\nbetween countries. An example of such discrepancy is the COVID-19 epidemics\nobserved in Denmark and Hungary during winter 2020/2021, for which the reported\ncase-counts were comparable but the true prevalence were very different. The\nmodel provides a quantitative measure for the ascertainment rate between\nobserved and true incidence, allowing for test-intensity correction of\nincidence data. By comparing the model to the country-wide epidemic of the\nOmicron variant (BA.1 and BA.2) in Denmark during the winter 2021/2022, we find\na good agreement between the cumulative incidence as estimated by the model and\nas suggested by serology-studies. While the model does not capture the full\ncomplexity of epidemic outbreaks and the effect of different interventions, it\nprovides a simple way to correct raw case-counts for differences in voluntary\ntesting, making comparison across international borders and testing behaviour\npossible.","PeriodicalId":501044,"journal":{"name":"arXiv - QuanBio - Populations and Evolution","volume":"18 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-08-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"What you saw is what you got? -- Correcting reported incidence data for testing intensity\",\"authors\":\"Rasmus Kristoffer Pedersen, Christian Berrig, Tamás Tekeli, Gergely Röst, Viggo Andreasen\",\"doi\":\"arxiv-2408.11524\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"During the COVID-19 pandemic, different types of non-pharmaceutical\\ninterventions played an important role in the efforts to control outbreaks and\\nto limit the spread of the SARS-CoV-2 virus. In certain countries, large-scale\\nvoluntary testing of non-symptomatic individuals was done, with the aim of\\nidentifying asymptomatic and pre-symptomatic infections as well as gauging the\\nprevalence in the general population. In this work, we present a mathematical\\nmodel, used to investigate the dynamics of both observed and unobserved\\ninfections as a function of the rate of voluntary testing. The model indicate\\nthat increasing the rate of testing causes the observed prevalence to increase,\\ndespite a decrease in the true prevalence. For large testing rates, the\\nobserved prevalence also decrease. The non-monotonicity of observed prevalence\\nexplains some of the discrepancies seen when comparing uncorrected case-counts\\nbetween countries. An example of such discrepancy is the COVID-19 epidemics\\nobserved in Denmark and Hungary during winter 2020/2021, for which the reported\\ncase-counts were comparable but the true prevalence were very different. The\\nmodel provides a quantitative measure for the ascertainment rate between\\nobserved and true incidence, allowing for test-intensity correction of\\nincidence data. By comparing the model to the country-wide epidemic of the\\nOmicron variant (BA.1 and BA.2) in Denmark during the winter 2021/2022, we find\\na good agreement between the cumulative incidence as estimated by the model and\\nas suggested by serology-studies. While the model does not capture the full\\ncomplexity of epidemic outbreaks and the effect of different interventions, it\\nprovides a simple way to correct raw case-counts for differences in voluntary\\ntesting, making comparison across international borders and testing behaviour\\npossible.\",\"PeriodicalId\":501044,\"journal\":{\"name\":\"arXiv - QuanBio - Populations and Evolution\",\"volume\":\"18 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-08-21\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"arXiv - QuanBio - Populations and Evolution\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/arxiv-2408.11524\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - QuanBio - Populations and Evolution","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2408.11524","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
What you saw is what you got? -- Correcting reported incidence data for testing intensity
During the COVID-19 pandemic, different types of non-pharmaceutical
interventions played an important role in the efforts to control outbreaks and
to limit the spread of the SARS-CoV-2 virus. In certain countries, large-scale
voluntary testing of non-symptomatic individuals was done, with the aim of
identifying asymptomatic and pre-symptomatic infections as well as gauging the
prevalence in the general population. In this work, we present a mathematical
model, used to investigate the dynamics of both observed and unobserved
infections as a function of the rate of voluntary testing. The model indicate
that increasing the rate of testing causes the observed prevalence to increase,
despite a decrease in the true prevalence. For large testing rates, the
observed prevalence also decrease. The non-monotonicity of observed prevalence
explains some of the discrepancies seen when comparing uncorrected case-counts
between countries. An example of such discrepancy is the COVID-19 epidemics
observed in Denmark and Hungary during winter 2020/2021, for which the reported
case-counts were comparable but the true prevalence were very different. The
model provides a quantitative measure for the ascertainment rate between
observed and true incidence, allowing for test-intensity correction of
incidence data. By comparing the model to the country-wide epidemic of the
Omicron variant (BA.1 and BA.2) in Denmark during the winter 2021/2022, we find
a good agreement between the cumulative incidence as estimated by the model and
as suggested by serology-studies. While the model does not capture the full
complexity of epidemic outbreaks and the effect of different interventions, it
provides a simple way to correct raw case-counts for differences in voluntary
testing, making comparison across international borders and testing behaviour
possible.