揭示细胞死亡相关基因和免疫动态对肺腺癌耐药性的影响:风险评分模型和功能性见解

Yuanyuan Xiao, Shancheng He, Baochang Xie, Wenqi Zhao, Dengliang Ji
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摘要

肺腺癌(LUAD)的特点是异质性和复杂的发病机制,本研究的重点是调查细胞死亡相关基因与 LUAD 之间的关联。通过机器学习,利用 Coxboost rsf 算法建立了一个风险评分模型,该模型在验证数据集(GSE30219、GSE31210、GSE72094)和训练数据集(TCGA-LUAD)中都表现出很高的预后准确性,C 指数分别为 0.93、0.67、0.68 和 0.64。研究发现,与正常支气管上皮细胞(BEAS-2B)相比,角蛋白18(KRT18)这一关键细胞骨架蛋白在LUAD细胞系(DV-90、PC-9、A549)中的表达存在差异,这表明角蛋白18在LUAD的发病机制中发挥着潜在作用。卡普兰-梅耶生存曲线进一步验证了该模型,表明低风险组的生存期更长。对基因表达、功能差异、免疫浸润和突变的综合分析凸显了不同风险组之间的显著差异,突出了高风险组的免疫功能障碍。这表明肿瘤免疫环境更加错综复杂,有可能采用其他治疗策略。该研究还深入探讨了药物敏感性,显示了不同风险组之间的不同反应,强调了在对LUAD患者进行治疗决策时进行风险分层的重要性。此外,研究还探讨了 KRT18 的表观遗传调控及其与免疫细胞浸润和免疫调节分子的相关性,表明 KRT18 在肿瘤免疫环境中发挥着重要作用。这项研究不仅为 LUAD 的预后提供了有价值的工具,还揭示了细胞死亡相关基因、药物敏感性和免疫浸润之间复杂的相互作用,将 KRT18 定位为潜在的治疗或预后靶点,通过个性化 LUAD 治疗策略改善患者预后。
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Unveiling the impact of cell death-related genes and immune dynamics on drug resistance in lung adenocarcinoma: a risk score model and functional insights

Lung adenocarcinoma (LUAD), characterized by its heterogeneity and complex pathogenesis, is the focus of this study which investigates the association between cell death-related genes and LUAD. Through machine learning, a risk score model was developed using the Coxboost rsf algorithm, demonstrating strong prognostic accuracy in both validation (GSE30219, GSE31210, GSE72094) and training (TCGA-LUAD) datasets with C-indices of 0.93, 0.67, 0.68, and 0.64, respectively. The study reveals that the expression of Keratin 18 (KRT18), a key cytoskeletal protein, varies across LUAD cell lines (DV-90, PC-9, A549) compared to normal bronchial epithelial cells (BEAS-2B), suggesting its potential role in LUAD's pathogenesis. Kaplan–Meier survival curves further validate the model, indicating longer survival in the low-risk group. A comprehensive analysis of gene expression, functional differences, immune infiltration, and mutations underscores significant variations between risk groups, highlighting the high-risk group's immunological dysfunction. This points to a more intricate tumor immune environment and the possibility of alternative therapeutic strategies. The study also delves into drug sensitivity, showing distinct responses between risk groups, underscoring the importance of risk stratification in treatment decisions for LUAD patients. Additionally, it explores KRT18's epigenetic regulation and its correlation with immune cell infiltration and immune regulatory molecules, suggesting KRT18's significant role in the tumor immune landscape. This research not only offers a valuable prognostic tool for LUAD but also illuminates the complex interplay between cell death-related genes, drug sensitivity, and immune infiltration, positioning KRT18 as a potential therapeutic or prognostic target to improve patient outcomes by personalizing LUAD treatment strategies.

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