Michaela K. Loveless, Minwei Che, Alec J. Sanchez, Vikrant Tripathy, Bo W. Laursen, Sudhakar Pamidighantam, Krishnan Raghavachari and Amar H. Flood
{"title":"提取荧光团的氧化还原数据与光学数据配对,以预测小分子离子隔离晶格","authors":"Michaela K. Loveless, Minwei Che, Alec J. Sanchez, Vikrant Tripathy, Bo W. Laursen, Sudhakar Pamidighantam, Krishnan Raghavachari and Amar H. Flood","doi":"10.1039/D4DD00137K","DOIUrl":null,"url":null,"abstract":"<p >Redox and optical data of organic fluorophores are essential for using design rules and property screening to identify new candidate dyes capable of forming optical materials. One such optical material is small-molecule, ionic isolation lattices (SMILES), which have properties defined by the optical and electrochemical properties of the fluorophores used. While optical data are available and readily extracted, the promise of digital discovery to mine the data and identify new dye candidates for making new fluorescent compounds is limited by experimental electrochemical data, which is reported with varying quality. We report methods to extract data from 20 000+ literature-reported dyes for generating a library of both redox and optical data constituted by 206 dye-solvent entries. Wide heterogeneity in data collection and reporting practices predicated use of a workflow involving manual data extraction, expert annotations of data quality and validation. Chemometric analysis shows distributions of solvents, electrolytes, and reference electrodes used in electrochemistry and the distributions of dye families and molecular weights. Data were extracted and screened to identify fluorophores predicted to form fluorescent solids based on SMILES. Screening used three design rules requiring dyes to be cationic, have a redox window within −1.9 and +1.5 V (<em>vs.</em> ferrocene), and a size less than 2 nm. A set of 47 dyes are compliant with all design rules showcasing the potential for using paired electrochemical-optical data in a workflow for designing optical materials.</p>","PeriodicalId":72816,"journal":{"name":"Digital discovery","volume":null,"pages":null},"PeriodicalIF":6.2000,"publicationDate":"2024-09-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2024/dd/d4dd00137k?page=search","citationCount":"0","resultStr":"{\"title\":\"Extracting recalcitrant redox data on fluorophores to pair with optical data for predicting small-molecule, ionic isolation lattices†\",\"authors\":\"Michaela K. Loveless, Minwei Che, Alec J. Sanchez, Vikrant Tripathy, Bo W. Laursen, Sudhakar Pamidighantam, Krishnan Raghavachari and Amar H. Flood\",\"doi\":\"10.1039/D4DD00137K\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p >Redox and optical data of organic fluorophores are essential for using design rules and property screening to identify new candidate dyes capable of forming optical materials. One such optical material is small-molecule, ionic isolation lattices (SMILES), which have properties defined by the optical and electrochemical properties of the fluorophores used. While optical data are available and readily extracted, the promise of digital discovery to mine the data and identify new dye candidates for making new fluorescent compounds is limited by experimental electrochemical data, which is reported with varying quality. We report methods to extract data from 20 000+ literature-reported dyes for generating a library of both redox and optical data constituted by 206 dye-solvent entries. Wide heterogeneity in data collection and reporting practices predicated use of a workflow involving manual data extraction, expert annotations of data quality and validation. Chemometric analysis shows distributions of solvents, electrolytes, and reference electrodes used in electrochemistry and the distributions of dye families and molecular weights. Data were extracted and screened to identify fluorophores predicted to form fluorescent solids based on SMILES. Screening used three design rules requiring dyes to be cationic, have a redox window within −1.9 and +1.5 V (<em>vs.</em> ferrocene), and a size less than 2 nm. A set of 47 dyes are compliant with all design rules showcasing the potential for using paired electrochemical-optical data in a workflow for designing optical materials.</p>\",\"PeriodicalId\":72816,\"journal\":{\"name\":\"Digital discovery\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":6.2000,\"publicationDate\":\"2024-09-03\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://pubs.rsc.org/en/content/articlepdf/2024/dd/d4dd00137k?page=search\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Digital discovery\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://pubs.rsc.org/en/content/articlelanding/2024/dd/d4dd00137k\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Digital discovery","FirstCategoryId":"1085","ListUrlMain":"https://pubs.rsc.org/en/content/articlelanding/2024/dd/d4dd00137k","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
Extracting recalcitrant redox data on fluorophores to pair with optical data for predicting small-molecule, ionic isolation lattices†
Redox and optical data of organic fluorophores are essential for using design rules and property screening to identify new candidate dyes capable of forming optical materials. One such optical material is small-molecule, ionic isolation lattices (SMILES), which have properties defined by the optical and electrochemical properties of the fluorophores used. While optical data are available and readily extracted, the promise of digital discovery to mine the data and identify new dye candidates for making new fluorescent compounds is limited by experimental electrochemical data, which is reported with varying quality. We report methods to extract data from 20 000+ literature-reported dyes for generating a library of both redox and optical data constituted by 206 dye-solvent entries. Wide heterogeneity in data collection and reporting practices predicated use of a workflow involving manual data extraction, expert annotations of data quality and validation. Chemometric analysis shows distributions of solvents, electrolytes, and reference electrodes used in electrochemistry and the distributions of dye families and molecular weights. Data were extracted and screened to identify fluorophores predicted to form fluorescent solids based on SMILES. Screening used three design rules requiring dyes to be cationic, have a redox window within −1.9 and +1.5 V (vs. ferrocene), and a size less than 2 nm. A set of 47 dyes are compliant with all design rules showcasing the potential for using paired electrochemical-optical data in a workflow for designing optical materials.