单个远端突变通过稳定 PET 结合增强已知 PET 酶的活性

Xiaozhi Fu, Oriol Gracia i Carmona, Gyorgy Abrusan, Xiang Jiao, Alexander Diaciuc, Mathias Gautel, Franca Fraternali, Aleksej Zelezniak
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摘要

作为塑料污染的一个主要来源,PET 因其在循环经济中的潜力而引起了生物降解的极大兴趣。寻找有效的酶仍然是一项挑战,因为筛选方法受限于低通量或因 PET 的不溶性而依赖于替代性非 PET 底物。在此,我们报告了一种高活性、稳定和稳健的酶 Fast_2.9,该酶是在中温条件下利用液滴封装 PET 纳米颗粒直接筛选 PET 降解活性时发现的,通量超过 1 kHz。在对未经处理的消费后塑料进行测试时,我们发现了一个远端 S269T 突变,该突变提高了大多数已知 PET 酶的活性,是野生型的 400 倍,是已知工程 PET 酶的两倍多。微秒时间尺度的分子动力学分析表明,这种远距离突变可能通过一种跨 PET 酶的共同机制影响底物结合裂隙附近的残基。与最先进的 FastPETase 和 LCC_ICCG 酶相比,工程化的 Fast_2.9 酶达到相同酶活性所需的酶浓度分别低 8 倍和 42 倍,最终所需酶量大大减少。因此,我们的工程酶在 50 摄氏度的条件下,只需 0.72 mgenzyme/gPET 就能在短短两天内降解包括聚酯纺织品在内的多种消费后 PET 底物,对苯二甲酸转化率高达近 100%。
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Single Distal Mutation Enhances Activity of known PETases via Stabilisation of PET-binding
As a major source of plastic pollution, PET has attracted significant interest for biodegradation due to its potential in the circular economy. Finding effective enzymes still remains a challenge as screening methods are limited by either the low throughput or dependence on alternative non-PET substrates due to PET's insolubility. Here, we report a highly active, stable and robust enzyme, Fast_2.9, identified while directly screening for PET-degrading activity in mesophilic conditions using droplet-based encapsulation of PET nanoparticles with the throughput above 1 kHz. We identified a distal S269T mutation that improves activity in the majority of all known PETases with up to 400 times over wildtype, and more than twice of known engineered PETases, as tested on untreated post-consumer plastics. Microsecond time scale molecular dynamics analyses indicate that this distant mutation possibly influences residues near the substrate-binding cleft via a common mechanism across PETases. Compared to the state-of-the-art FastPETase and LCC_ICCG enzymes, the engineered Fast_2.9 enzyme requires up to 8 and 42 times lower enzyme concentrations to reach the same enzymatic activity, ultimately requiring significantly less enzyme. As such our engineered enzyme degrades multiple post-consumer PET substrates, including polyester textiles, within as least as just 2 days with up to nearly 100% terephthalic acid conversion using as little as 0.72 mgenzyme/gPET at 50 degrees C. Our study presents a universal methodology for direct screening of insoluble substrates at ultra-high-throughput and highlights the techno-economic potential of Fast_2.9 for PET depolymerisation.
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