揭示雌激素暴露对卵巢癌的影响:综合风险模型和免疫景观分析。

IF 3.2 4区 医学 Q1 Pharmacology, Toxicology and Pharmaceutics Toxicology Mechanisms and Methods Pub Date : 2024-09-09 DOI:10.1080/15376516.2024.2402865
Zhongna Yu,Weili Yang,Qinwei Zhang,Mengyu Zheng
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引用次数: 0

摘要

本研究探讨了双酚 A(BPA)、雌二醇(E2)和玉米赤霉烯酮(ZEA)等雌激素化合物对人类卵巢癌的影响,重点是构建风险模型、进行基因组变异分析(GSVA)和评估免疫浸润。差异基因表达分析在暴露于双酚A、E2和ZEA的人类卵巢细胞中发现了980个共有的差异表达基因(DEGs),表明核糖体生物发生和RNA加工发生了紊乱。利用癌症基因组图谱卵巢癌(TCGA-OV)数据集,开发了一种基于最小绝对收缩和选择算子(LASSO)的风险模型,其中纳入了预后基因4-羟基苯丙酮酸二氧化酶样(HPDL)、Thy-1细胞表面抗原(THY1)和肽酶抑制剂3(PI3)。该模型有效地将卵巢癌患者分为高危和低危两类,并在总生存期、疾病特异性生存期和无进展生存期方面显示出显著差异。GSVA分析将HPDL的表达与细胞周期、DNA损伤和修复相关的通路联系起来,而THY1和PI3则与细胞凋亡、缺氧和增殖通路相关。免疫浸润分析显示,HPDL、THY1 和 PI3 的高表达组和低表达组的免疫细胞特征各不相同,这表明它们对肿瘤微环境有影响。研究结果表明,雌激素化合物会显著改变卵巢癌的基因表达和致癌途径。整合了HPDL、THY1和PI3的风险模型提供了一个强有力的预后工具,GSVA和免疫浸润分析深入揭示了这些基因与肿瘤微环境之间的相互作用,为个性化疗法提出了潜在的靶点。
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Unveiling the impact of estrogen exposure on ovarian cancer: A comprehensive risk model and immune landscape analysis.
This study examines the impact of estrogenic compounds like bisphenol A (BPA), estradiol (E2), and zearalenone (ZEA) on human ovarian cancer, focusing on constructing a risk model, conducting Gene Set Variation Analysis (GSVA), and evaluating immune infiltration. Differential gene expression analysis identified 980 shared differentially expressed genes (DEGs) in human ovarian cells exposed to BPA, E2, and ZEA, indicating disruptions in ribosome biogenesis and RNA processing. Using the Cancer Genome Atlas Ovarian Cancer (TCGA-OV) dataset, a least absolute shrinkage and selection operator (LASSO)-based risk model was developed incorporating prognostic genes 4-Hydroxyphenylpyruvate Dioxygenase Like (HPDL), Thy-1 Cell Surface Antigen (THY1), and Peptidase Inhibitor 3 (PI3). This model effectively stratified ovarian cancer patients into high-risk and low-risk categories, showing significant differences in overall survival, disease-specific survival, and progression-free survival. GSVA analysis linked HPDL expression to pathways related to the cell cycle, DNA damage, and repair, while THY1 and PI3 were associated with apoptosis, hypoxia, and proliferation pathways. Immune infiltration analysis revealed distinct immune cell profiles for high and low expression groups of HPDL, THY1, and PI3, indicating their influence on the tumor microenvironment. The findings demonstrate that estrogenic compounds significantly alter gene expression and oncogenic pathways in ovarian cancer. The risk model integrating HPDL, THY1, and PI3 offers a strong prognostic tool, with GSVA and immune infiltration analyses providing insights into the interplay between these genes and the tumor microenvironment, suggesting potential targets for personalized therapies.
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来源期刊
CiteScore
6.60
自引率
3.10%
发文量
66
审稿时长
6-12 weeks
期刊介绍: Toxicology Mechanisms and Methods is a peer-reviewed journal whose aim is twofold. Firstly, the journal contains original research on subjects dealing with the mechanisms by which foreign chemicals cause toxic tissue injury. Chemical substances of interest include industrial compounds, environmental pollutants, hazardous wastes, drugs, pesticides, and chemical warfare agents. The scope of the journal spans from molecular and cellular mechanisms of action to the consideration of mechanistic evidence in establishing regulatory policy. Secondly, the journal addresses aspects of the development, validation, and application of new and existing laboratory methods, techniques, and equipment. A variety of research methods are discussed, including: In vivo studies with standard and alternative species In vitro studies and alternative methodologies Molecular, biochemical, and cellular techniques Pharmacokinetics and pharmacodynamics Mathematical modeling and computer programs Forensic analyses Risk assessment Data collection and analysis.
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