利用光谱学和计算方法研究可可碱与模型蛋白质之间相互作用的特征

IF 4 2区 化学 Q2 CHEMISTRY, PHYSICAL Journal of Molecular Structure Pub Date : 2024-09-12 DOI:10.1016/j.molstruc.2024.139997
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引用次数: 0

摘要

本研究采用荧光光谱、傅立叶变换红外光谱、分子对接和分子动力学模拟等方法,研究了木犀草素与模型蛋白(BSA、HSA、OVA 和 HEL)的相互作用。研究结果表明,不同浓度的木犀草素可淬灭 BSA、HSA、OVA 和 HEL 的内源性荧光强度,这是典型的静态淬灭过程。木蝴蝶素与这些模型蛋白的结合常数(Ka)在104-105 mol-L-1之间,其中与HSA的亲和力最高。根据热力学参数和计算模拟研究,认为木蝴蝶素与BSA、HSA、OVA和HEL的结合力主要是氢键、范德华力和疏水作用。光谱结果表明,松脂素与 BSA、HSA、OVA 和 HEL 的结合引起了构象和微环境的变化。木蝴蝶素能降低BSA、HSA和OVA的α-螺旋百分比,但能增加HEL的α-螺旋百分比。结合置换研究证实,Casticin与BSA和HSA的Sudlow位点I结合。分子对接预测了松香素与 BSA、HSA、OVA 和 HEL 的结合模型,随后进行了分子动力学模拟以评估其结合稳定性。
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The study on characterization of interaction between casticin and model proteins using spectroscopic and computational methodologies

The present studies were conducted to investigate the interaction of casticin to model proteins (BSA, HSA, OVA and HEL) using fluorescence spectra, Fourier transform infrared spectra, molecular docking and molecular dynamics simulation methodologies. Our work displayed that the endogenous fluorescence intensities of BSA, HSA, OVA and HEL were quenched by various concentrations of casticin were the typical static quenching process. The binding constants (Ka) of casticin for these model proteins were in the range of 104–105 mol·L-1, with the highest affinity for HSA. On the basis of thermodynamic parameters and computational simulation studies, it was suggested that the binding force of casticin to BSA, HSA, OVA and HEL were mainly hydrogen bonds, van der Waals forces and hydrophobic interactions. The spectral results illustrated that the binding of casticin to BSA, HSA, OVA and HEL induced conformational and microenvironmental changes. Casticin could decrease the α-helix percentages of BSA, HSA and OVA, but increase that of HEL. Binding substitution studies confirmed that casticin bound to the Sudlow site I of BSA and HSA. Molecular docking predicted the binding models of casticin to BSA, HSA, OVA and HEL, followed closely by molecular dynamic simulations to assess the binding stability.

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来源期刊
Journal of Molecular Structure
Journal of Molecular Structure 化学-物理化学
CiteScore
7.10
自引率
15.80%
发文量
2384
审稿时长
45 days
期刊介绍: The Journal of Molecular Structure is dedicated to the publication of full-length articles and review papers, providing important new structural information on all types of chemical species including: • Stable and unstable molecules in all types of environments (vapour, molecular beam, liquid, solution, liquid crystal, solid state, matrix-isolated, surface-absorbed etc.) • Chemical intermediates • Molecules in excited states • Biological molecules • Polymers. The methods used may include any combination of spectroscopic and non-spectroscopic techniques, for example: • Infrared spectroscopy (mid, far, near) • Raman spectroscopy and non-linear Raman methods (CARS, etc.) • Electronic absorption spectroscopy • Optical rotatory dispersion and circular dichroism • Fluorescence and phosphorescence techniques • Electron spectroscopies (PES, XPS), EXAFS, etc. • Microwave spectroscopy • Electron diffraction • NMR and ESR spectroscopies • Mössbauer spectroscopy • X-ray crystallography • Charge Density Analyses • Computational Studies (supplementing experimental methods) We encourage publications combining theoretical and experimental approaches. The structural insights gained by the studies should be correlated with the properties, activity and/ or reactivity of the molecule under investigation and the relevance of this molecule and its implications should be discussed.
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