量化圆内和圆外粒子之间的随机碰撞

IF 2.7 3区 数学 Q1 MATHEMATICS, APPLIED Physica D: Nonlinear Phenomena Pub Date : 2024-09-10 DOI:10.1016/j.physd.2024.134361
Xi Chen , Hui Wang , Jinqiao Duan
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引用次数: 0

摘要

粒子的随机碰撞发生在各种生物物理和物理系统中。受细胞膜上受体和配体结合的启发,我们设计了一种基于随机动力学建模的方法来量化两个随机粒子在圆上碰撞的可能性。我们考虑的是细胞膜上受体与配体结合的动态,其中受体和配体执行不同的运动,因此用具有非高斯噪声的随机微分方程建模。我们使用基于 Onsager-Machlup 函数的神经网络来计算无约束受体扩散到细胞膜的概率 P1。同时,我们通过求解相关的非局部福克-普朗克方程,计算细胞外配体到达细胞膜的概率 P2。然后,我们可以结合 P1 和 P2 计算出最可能的结合概率。通过这种方法,我们可以得出受体在膜上的分布情况,以及配体最有可能与受体相遇的位置,从而有助于更好地理解细胞对外部刺激的反应以及与其他细胞的交流。
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Quantifying random collisions between particles inside and outside a circle

Random collisions of particles occur in various biophysical and physical systems. Inspired by the binding of receptor and ligand on the cell membrane, we devised a method based on stochastic dynamical modeling to quantify the likelihood of two random particles colliding on a circle. We consider the dynamics of a receptor binding to a ligand on the cell membrane, where the receptor and ligand perform different motions and are thus modeled by stochastic differential equations with non-Gaussian noise. We use neural networks based on the Onsager–Machlup function to compute the probability P1 of an unbounded receptor diffusing to the cell membrane. Meanwhile, we compute the probability P2 of the extracellular ligand arriving at the cell membrane by solving the associated nonlocal Fokker–Planck equation. We can then calculate the most probable binding probability by combining P1 and P2. In this way, we conclude with some indication of how the receptors could distribute on the membrane, as well as where the ligand will most probably encounter the receptor, contributing to a better understanding of the cell’s response to external stimuli and communication with other cells.

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来源期刊
Physica D: Nonlinear Phenomena
Physica D: Nonlinear Phenomena 物理-物理:数学物理
CiteScore
7.30
自引率
7.50%
发文量
213
审稿时长
65 days
期刊介绍: Physica D (Nonlinear Phenomena) publishes research and review articles reporting on experimental and theoretical works, techniques and ideas that advance the understanding of nonlinear phenomena. Topics encompass wave motion in physical, chemical and biological systems; physical or biological phenomena governed by nonlinear field equations, including hydrodynamics and turbulence; pattern formation and cooperative phenomena; instability, bifurcations, chaos, and space-time disorder; integrable/Hamiltonian systems; asymptotic analysis and, more generally, mathematical methods for nonlinear systems.
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