{"title":"雪松根腐病病原体 Pythium cedri Chen 4 的基因组序列数据草案","authors":"Jin-Feng Peng , Yusufjon Gafforov , Jian Yu , Hong-Jun Yang , Yuan-Yuan Chen , Yi-Fan Xing , Jia-Jia Chen","doi":"10.1016/j.dib.2024.110930","DOIUrl":null,"url":null,"abstract":"<div><p><em>Pythium</em> species are distributed globally, with certain members playing significant roles as plant and animal pathogens. <em>Pythium cedri</em> Chen 4 has been identified as a pathogenic isolate responsible for causing root rot on <em>Cedrus deodara</em>. Here, a comprehensive genome-wide sequence of <em>P. cedri</em> strain Chen 4 utilizing the Illumina NovaSeq sequencing platform and a Pacific Biosciences Sequel sequencing platform is presented. The genome of <em>P. cedri</em> strain Chen 4 was assembled into 150 contigs containing a combined size of 41.25 Mb, N50 value of 1,717,859 bp and N90 value of 431,829 bp. Genome annotation revealed 14,077 protein-encoding genes and 364 of the 1016 predicted proteins were putative effectors. The present work enriches the genetic resources of <em>P. cedri</em> for studying its evolution and can contribute to a better understanding of <em>P. cedri</em>–host interaction.</p></div>","PeriodicalId":10973,"journal":{"name":"Data in Brief","volume":null,"pages":null},"PeriodicalIF":1.0000,"publicationDate":"2024-09-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S235234092400893X/pdfft?md5=f03447556a8cfafd5002ce4eb4d679e3&pid=1-s2.0-S235234092400893X-main.pdf","citationCount":"0","resultStr":"{\"title\":\"Draft genome sequence data of Pythium cedri Chen 4, the causal pathogen of deodar cedar root rot\",\"authors\":\"Jin-Feng Peng , Yusufjon Gafforov , Jian Yu , Hong-Jun Yang , Yuan-Yuan Chen , Yi-Fan Xing , Jia-Jia Chen\",\"doi\":\"10.1016/j.dib.2024.110930\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p><em>Pythium</em> species are distributed globally, with certain members playing significant roles as plant and animal pathogens. <em>Pythium cedri</em> Chen 4 has been identified as a pathogenic isolate responsible for causing root rot on <em>Cedrus deodara</em>. Here, a comprehensive genome-wide sequence of <em>P. cedri</em> strain Chen 4 utilizing the Illumina NovaSeq sequencing platform and a Pacific Biosciences Sequel sequencing platform is presented. The genome of <em>P. cedri</em> strain Chen 4 was assembled into 150 contigs containing a combined size of 41.25 Mb, N50 value of 1,717,859 bp and N90 value of 431,829 bp. Genome annotation revealed 14,077 protein-encoding genes and 364 of the 1016 predicted proteins were putative effectors. The present work enriches the genetic resources of <em>P. cedri</em> for studying its evolution and can contribute to a better understanding of <em>P. cedri</em>–host interaction.</p></div>\",\"PeriodicalId\":10973,\"journal\":{\"name\":\"Data in Brief\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":1.0000,\"publicationDate\":\"2024-09-10\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.sciencedirect.com/science/article/pii/S235234092400893X/pdfft?md5=f03447556a8cfafd5002ce4eb4d679e3&pid=1-s2.0-S235234092400893X-main.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Data in Brief\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S235234092400893X\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"MULTIDISCIPLINARY SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Data in Brief","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S235234092400893X","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"MULTIDISCIPLINARY SCIENCES","Score":null,"Total":0}
Draft genome sequence data of Pythium cedri Chen 4, the causal pathogen of deodar cedar root rot
Pythium species are distributed globally, with certain members playing significant roles as plant and animal pathogens. Pythium cedri Chen 4 has been identified as a pathogenic isolate responsible for causing root rot on Cedrus deodara. Here, a comprehensive genome-wide sequence of P. cedri strain Chen 4 utilizing the Illumina NovaSeq sequencing platform and a Pacific Biosciences Sequel sequencing platform is presented. The genome of P. cedri strain Chen 4 was assembled into 150 contigs containing a combined size of 41.25 Mb, N50 value of 1,717,859 bp and N90 value of 431,829 bp. Genome annotation revealed 14,077 protein-encoding genes and 364 of the 1016 predicted proteins were putative effectors. The present work enriches the genetic resources of P. cedri for studying its evolution and can contribute to a better understanding of P. cedri–host interaction.
期刊介绍:
Data in Brief provides a way for researchers to easily share and reuse each other''s datasets by publishing data articles that: -Thoroughly describe your data, facilitating reproducibility. -Make your data, which is often buried in supplementary material, easier to find. -Increase traffic towards associated research articles and data, leading to more citations. -Open up doors for new collaborations. Because you never know what data will be useful to someone else, Data in Brief welcomes submissions that describe data from all research areas.