生物信息学与实验验证相结合,探索 HBV 相关急性肝衰竭的乳酸化相关生物标志物

IF 3.7 3区 医学 Q2 GASTROENTEROLOGY & HEPATOLOGY Journal of Gastroenterology and Hepatology Pub Date : 2024-09-17 DOI:10.1111/jgh.16739
Hao Pei, Yue‐qiao Chen, Feng‐lan Wu, Yan‐yan Zhang, Xue Zhang, Jian‐yu Li, Li‐yi Pan, Yu Chen, Yu‐wen Huang
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Subsequently, the feature genes obtained from least absolute shrinkage and selection operator regression analysis and support vector machine analysis were intersected to obtain the candidate key genes. Among them, genes with consistent and significant expression trends in both GSE38941 and GSE14668 were used as biomarkers. Subsequently, biomarkers were analyzed for functional enrichment, immune infiltration, and sensitive drug prediction.ResultsIn this study, five candidate genes (<jats:italic>PIGM</jats:italic>, <jats:italic>PIGA</jats:italic>, <jats:italic>EGR1</jats:italic>, <jats:italic>PIGK</jats:italic>, and <jats:italic>PIGL</jats:italic>) were identified by intersecting 6461 DEGs and 2496 key module genes with 65 LRGs. We then screened four candidate key genes from the machine learning algorithm, among which <jats:italic>PIGM</jats:italic> and <jats:italic>PIGA</jats:italic> were considered biomarkers in HBV‐ALF. 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引用次数: 0

摘要

背景和目的目前,乙型肝炎病毒相关急性肝衰竭(HBV-ALF)的治疗方案有限。研究表明,组蛋白乳化在肝脏相关疾病的进展中起着一定的作用。因此,探索 HBV-ALF 中乳化相关基因(LRGs)的生物标志物,为 HBV-ALF 的治疗提供新的信息至关重要。首先,通过差异表达分析获得差异表达基因(DEGs),通过加权基因共表达网络分析获得关键模块基因,通过 LRGs 交叉获得候选基因。随后,通过最小绝对收缩和选择算子回归分析以及支持向量机分析得到的特征基因进行交叉,得到候选关键基因。其中,在 GSE38941 和 GSE14668 中具有一致且显著表达趋势的基因被用作生物标志物。结果在这项研究中,通过将 6461 个 DEGs 和 2496 个关键模块基因与 65 个 LRGs 相交,确定了五个候选基因(PIGM、PIGA、EGR1、PIGK 和 PIGL)。然后,我们通过机器学习算法筛选出四个候选关键基因,其中 PIGM 和 PIGA 被认为是 HBV-ALF 的生物标志物。此外,富集分析结果显示,生物标志物的信号通路显著富集,包括异体移植排斥反应和缬氨酸、亮氨酸和异亮氨酸降解。此后,11 种免疫细胞在不同组间存在显著差异,其中静息记忆 CD4+ T 细胞与生物标志物的正相关性最强。结论:PIGM 和 PIGA 这两个基因被鉴定为与 HBV-ALF 中 LRGs 相关的生物标志物,为了解 HBV-ALF 发病机制提供了依据。
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Bioinformatics and experimental validation were combined to explore lactylation‐related biomarkers in HBV‐associated acute liver failure
Background and AimCurrently, hepatitis B virus‐related acute liver failure (HBV‐ALF) has limited treatment options. Studies have shown that histone lactylation plays a role in the progression of liver‐related diseases. Therefore, it is essential to explore lactylation‐related gene (LRGs) biomarkers in HBV‐ALF to provide new information for the treatment of HBV‐ALF.MethodsTwo HBV‐ALF‐related datasets (GSE38941 and GSE14668) and 65 LRGs were used. First, the differentially expressed genes (DEGs) were derived from differential expression analysis, the key module genes from weighted gene co‐expression network analysis; and LRGs were used to intersect to obtain the candidate genes. Subsequently, the feature genes obtained from least absolute shrinkage and selection operator regression analysis and support vector machine analysis were intersected to obtain the candidate key genes. Among them, genes with consistent and significant expression trends in both GSE38941 and GSE14668 were used as biomarkers. Subsequently, biomarkers were analyzed for functional enrichment, immune infiltration, and sensitive drug prediction.ResultsIn this study, five candidate genes (PIGM, PIGA, EGR1, PIGK, and PIGL) were identified by intersecting 6461 DEGs and 2496 key module genes with 65 LRGs. We then screened four candidate key genes from the machine learning algorithm, among which PIGM and PIGA were considered biomarkers in HBV‐ALF. Moreover, the results of enrichment analysis showed that the significant enrichment signaling pathways for biomarkers included allograft rejection and valine, leucine, and isoleucine degradation. Thereafter, 11 immune cells differed significantly between groups, with resting memory CD4+ T cells having the strongest positive correlation with biomarkers. Methylphenidate hydrochloride is a potential therapeutic drug for PIGM.ConclusionTwo genes, PIGM and PIGA, were identified as biomarkers related to LRGs in HBV‐ALF, providing a basis for understanding HBV‐ALF pathogenesis.
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来源期刊
CiteScore
7.90
自引率
2.40%
发文量
326
审稿时长
2.3 months
期刊介绍: Journal of Gastroenterology and Hepatology is produced 12 times per year and publishes peer-reviewed original papers, reviews and editorials concerned with clinical practice and research in the fields of hepatology, gastroenterology and endoscopy. Papers cover the medical, radiological, pathological, biochemical, physiological and historical aspects of the subject areas. All submitted papers are reviewed by at least two referees expert in the field of the submitted paper.
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