干细胞相关基因在心力衰竭中的临床应用和免疫浸润状况

IF 3.2 2区 医学 Q2 CARDIAC & CARDIOVASCULAR SYSTEMS ESC Heart Failure Pub Date : 2024-09-14 DOI:10.1002/ehf2.15055
Wenting Yan, Yanling Li, Gang Wang, Yuan Huang, Ping Xie
{"title":"干细胞相关基因在心力衰竭中的临床应用和免疫浸润状况","authors":"Wenting Yan, Yanling Li, Gang Wang, Yuan Huang, Ping Xie","doi":"10.1002/ehf2.15055","DOIUrl":null,"url":null,"abstract":"BackgroundHeart failure (HF) is the leading cause of morbidity and mortality worldwide. Stemness refers to the self‐renewal and differentiation ability of cells. However, little is known about the heart's stemness properties. Thus, the current study aims to identify putative stemness‐related biomarkers to construct a viable prediction model of HF and characterize the immune infiltration features of HF.MethodsHF datasets from the Gene Expression Omnibus (GEO) database were adopted as the training and validation cohorts while stemness‐related genes were obtained from GeneCards and previously published papers. Feature selection was performed using two machine learning algorithms. Nomogram models were then constructed to predict HF risk based on the selected key genes. Moreover, the biological functions of the key genes were evaluated using Gene Ontology (GO) and Kyoto Encyclopedia of Genes Genomes (KEGG) pathway analyses, and gene set variation analysis (GSVA) and enrichment analysis (GSEA) were performed between the high‐ and low‐risk groups. The immune infiltration landscape in HF was investigated, and the interaction network of key genes was analysed to predict potential targets and molecular mechanisms.ResultsSeven key genes, namely <jats:italic>SMOC2</jats:italic>, <jats:italic>LUM</jats:italic>, <jats:italic>FNDC1</jats:italic>, <jats:italic>SCUBE2</jats:italic>, <jats:italic>CD163</jats:italic>, <jats:italic>BLM</jats:italic> and <jats:italic>S1PR3</jats:italic>, were included in the proposed nomogram. This nomogram showed good predictive performance for HF diagnosis in the training and validation sets. GO and KEGG analyses revealed that the key genes were primarily associated with ageing, inflammatory processes and DNA oxidation. GSEA and GSVA identified various inflammatory and immune signalling pathways that were enriched between the high‐ and low‐risk groups. The infiltration of 15 immune cell subsets suggests that adaptive immunity has an important role in HF.ConclusionsOur study identified a clinically significant stemness‐related signature for predicting HF risk, with the potential to improve early disease diagnosis, optimize risk stratification and provide new strategies for treating patients with HF.","PeriodicalId":11864,"journal":{"name":"ESC Heart Failure","volume":"7 1","pages":""},"PeriodicalIF":3.2000,"publicationDate":"2024-09-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Clinical application and immune infiltration landscape of stemness‐related genes in heart failure\",\"authors\":\"Wenting Yan, Yanling Li, Gang Wang, Yuan Huang, Ping Xie\",\"doi\":\"10.1002/ehf2.15055\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"BackgroundHeart failure (HF) is the leading cause of morbidity and mortality worldwide. Stemness refers to the self‐renewal and differentiation ability of cells. However, little is known about the heart's stemness properties. Thus, the current study aims to identify putative stemness‐related biomarkers to construct a viable prediction model of HF and characterize the immune infiltration features of HF.MethodsHF datasets from the Gene Expression Omnibus (GEO) database were adopted as the training and validation cohorts while stemness‐related genes were obtained from GeneCards and previously published papers. Feature selection was performed using two machine learning algorithms. Nomogram models were then constructed to predict HF risk based on the selected key genes. Moreover, the biological functions of the key genes were evaluated using Gene Ontology (GO) and Kyoto Encyclopedia of Genes Genomes (KEGG) pathway analyses, and gene set variation analysis (GSVA) and enrichment analysis (GSEA) were performed between the high‐ and low‐risk groups. The immune infiltration landscape in HF was investigated, and the interaction network of key genes was analysed to predict potential targets and molecular mechanisms.ResultsSeven key genes, namely <jats:italic>SMOC2</jats:italic>, <jats:italic>LUM</jats:italic>, <jats:italic>FNDC1</jats:italic>, <jats:italic>SCUBE2</jats:italic>, <jats:italic>CD163</jats:italic>, <jats:italic>BLM</jats:italic> and <jats:italic>S1PR3</jats:italic>, were included in the proposed nomogram. This nomogram showed good predictive performance for HF diagnosis in the training and validation sets. GO and KEGG analyses revealed that the key genes were primarily associated with ageing, inflammatory processes and DNA oxidation. GSEA and GSVA identified various inflammatory and immune signalling pathways that were enriched between the high‐ and low‐risk groups. The infiltration of 15 immune cell subsets suggests that adaptive immunity has an important role in HF.ConclusionsOur study identified a clinically significant stemness‐related signature for predicting HF risk, with the potential to improve early disease diagnosis, optimize risk stratification and provide new strategies for treating patients with HF.\",\"PeriodicalId\":11864,\"journal\":{\"name\":\"ESC Heart Failure\",\"volume\":\"7 1\",\"pages\":\"\"},\"PeriodicalIF\":3.2000,\"publicationDate\":\"2024-09-14\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"ESC Heart Failure\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://doi.org/10.1002/ehf2.15055\",\"RegionNum\":2,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"CARDIAC & CARDIOVASCULAR SYSTEMS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"ESC Heart Failure","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.1002/ehf2.15055","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CARDIAC & CARDIOVASCULAR SYSTEMS","Score":null,"Total":0}
引用次数: 0

摘要

背景心力衰竭(HF)是全球发病率和死亡率的主要原因。干性是指细胞的自我更新和分化能力。然而,人们对心脏的干性特性知之甚少。因此,本研究旨在确定与干性相关的潜在生物标志物,以构建可行的高频预测模型,并描述高频的免疫浸润特征。方法采用基因表达总库(GEO)数据库中的高频数据集作为训练和验证队列,而与干性相关的基因则从GeneCards和以前发表的论文中获得。使用两种机器学习算法进行特征选择。然后根据所选的关键基因构建了预测高频风险的提名图模型。此外,还利用基因本体(GO)和京都基因组百科全书(KEGG)通路分析评估了关键基因的生物学功能,并在高风险组和低风险组之间进行了基因组变异分析(GSVA)和富集分析(GSEA)。结果7个关键基因,即SMOC2、LUM、FNDC1、SCUBE2、CD163、BLM和S1PR3,被纳入所提出的提名图中。在训练集和验证集中,该提名图对高频诊断显示出良好的预测性能。GO 和 KEGG 分析显示,关键基因主要与衰老、炎症过程和 DNA 氧化有关。GSEA和GSVA确定了高风险组和低风险组之间富集的各种炎症和免疫信号通路。15个免疫细胞亚群的浸润表明,适应性免疫在心房颤动中起着重要作用。结论:我们的研究发现了一个具有临床意义的干细胞相关特征,可用于预测心房颤动风险,有望改善早期疾病诊断,优化风险分层,并为治疗心房颤动患者提供新策略。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Clinical application and immune infiltration landscape of stemness‐related genes in heart failure
BackgroundHeart failure (HF) is the leading cause of morbidity and mortality worldwide. Stemness refers to the self‐renewal and differentiation ability of cells. However, little is known about the heart's stemness properties. Thus, the current study aims to identify putative stemness‐related biomarkers to construct a viable prediction model of HF and characterize the immune infiltration features of HF.MethodsHF datasets from the Gene Expression Omnibus (GEO) database were adopted as the training and validation cohorts while stemness‐related genes were obtained from GeneCards and previously published papers. Feature selection was performed using two machine learning algorithms. Nomogram models were then constructed to predict HF risk based on the selected key genes. Moreover, the biological functions of the key genes were evaluated using Gene Ontology (GO) and Kyoto Encyclopedia of Genes Genomes (KEGG) pathway analyses, and gene set variation analysis (GSVA) and enrichment analysis (GSEA) were performed between the high‐ and low‐risk groups. The immune infiltration landscape in HF was investigated, and the interaction network of key genes was analysed to predict potential targets and molecular mechanisms.ResultsSeven key genes, namely SMOC2, LUM, FNDC1, SCUBE2, CD163, BLM and S1PR3, were included in the proposed nomogram. This nomogram showed good predictive performance for HF diagnosis in the training and validation sets. GO and KEGG analyses revealed that the key genes were primarily associated with ageing, inflammatory processes and DNA oxidation. GSEA and GSVA identified various inflammatory and immune signalling pathways that were enriched between the high‐ and low‐risk groups. The infiltration of 15 immune cell subsets suggests that adaptive immunity has an important role in HF.ConclusionsOur study identified a clinically significant stemness‐related signature for predicting HF risk, with the potential to improve early disease diagnosis, optimize risk stratification and provide new strategies for treating patients with HF.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
ESC Heart Failure
ESC Heart Failure Medicine-Cardiology and Cardiovascular Medicine
CiteScore
7.00
自引率
7.90%
发文量
461
审稿时长
12 weeks
期刊介绍: ESC Heart Failure is the open access journal of the Heart Failure Association of the European Society of Cardiology dedicated to the advancement of knowledge in the field of heart failure. The journal aims to improve the understanding, prevention, investigation and treatment of heart failure. Molecular and cellular biology, pathology, physiology, electrophysiology, pharmacology, as well as the clinical, social and population sciences all form part of the discipline that is heart failure. Accordingly, submission of manuscripts on basic, translational, clinical and population sciences is invited. Original contributions on nursing, care of the elderly, primary care, health economics and other specialist fields related to heart failure are also welcome, as are case reports that highlight interesting aspects of heart failure care and treatment.
期刊最新文献
Cardiogenic shock mortality according to Aetiology in a Mediterranean cohort: Results from the Shock-CAT study. Multivariate linear regression to predict association of non-invasive arterial stiffness with cardiovascular events. Analysis of the usefulness and benefits of ultrafiltration in cardiorenal syndrome: A systematic review. Two causes of COVID-19-related myocardial injury-associated cardiogenic shock: Myocarditis and microvascular thrombosis. Trametinib alters contractility of paediatric Noonan syndrome-associated hypertrophic myocardial tissue slices.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1