{"title":"细胞命运规格化过程中的动态景观和生长统计极限","authors":"Gautam Reddy","doi":"arxiv-2409.09548","DOIUrl":null,"url":null,"abstract":"The complexity of gene regulatory networks in multicellular organisms makes\ninterpretable low-dimensional models highly desirable. An attractive geometric\npicture, attributed to Waddington, visualizes the differentiation of a cell\ninto diverse functional types as gradient flow on a dynamic potential\nlandscape, but it is unclear under what biological constraints this metaphor is\nmathematically precise. Here, we show that growth-maximizing regulatory\nstrategies that guide a single cell to a target distribution of cell types are\ndescribed by time-dependent potential landscapes, under certain generic\ngrowth-control tradeoffs. Our analysis leads to a sharp bound on the time it\ntakes for a population to grow to a target distribution of a certain size. We\nshow how the framework can be used to compute Waddington-like epigenetic\nlandscapes and growth curves in an illustrative model of growth and\ndifferentiation. The theory suggests a conceptual link between nonequilibrium\nthermodynamics and cellular decision-making during development.","PeriodicalId":501572,"journal":{"name":"arXiv - QuanBio - Tissues and Organs","volume":"20 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-09-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Dynamic landscapes and statistical limits on growth during cell fate specification\",\"authors\":\"Gautam Reddy\",\"doi\":\"arxiv-2409.09548\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"The complexity of gene regulatory networks in multicellular organisms makes\\ninterpretable low-dimensional models highly desirable. An attractive geometric\\npicture, attributed to Waddington, visualizes the differentiation of a cell\\ninto diverse functional types as gradient flow on a dynamic potential\\nlandscape, but it is unclear under what biological constraints this metaphor is\\nmathematically precise. Here, we show that growth-maximizing regulatory\\nstrategies that guide a single cell to a target distribution of cell types are\\ndescribed by time-dependent potential landscapes, under certain generic\\ngrowth-control tradeoffs. Our analysis leads to a sharp bound on the time it\\ntakes for a population to grow to a target distribution of a certain size. We\\nshow how the framework can be used to compute Waddington-like epigenetic\\nlandscapes and growth curves in an illustrative model of growth and\\ndifferentiation. The theory suggests a conceptual link between nonequilibrium\\nthermodynamics and cellular decision-making during development.\",\"PeriodicalId\":501572,\"journal\":{\"name\":\"arXiv - QuanBio - Tissues and Organs\",\"volume\":\"20 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-09-14\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"arXiv - QuanBio - Tissues and Organs\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/arxiv-2409.09548\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - QuanBio - Tissues and Organs","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2409.09548","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Dynamic landscapes and statistical limits on growth during cell fate specification
The complexity of gene regulatory networks in multicellular organisms makes
interpretable low-dimensional models highly desirable. An attractive geometric
picture, attributed to Waddington, visualizes the differentiation of a cell
into diverse functional types as gradient flow on a dynamic potential
landscape, but it is unclear under what biological constraints this metaphor is
mathematically precise. Here, we show that growth-maximizing regulatory
strategies that guide a single cell to a target distribution of cell types are
described by time-dependent potential landscapes, under certain generic
growth-control tradeoffs. Our analysis leads to a sharp bound on the time it
takes for a population to grow to a target distribution of a certain size. We
show how the framework can be used to compute Waddington-like epigenetic
landscapes and growth curves in an illustrative model of growth and
differentiation. The theory suggests a conceptual link between nonequilibrium
thermodynamics and cellular decision-making during development.