细胞命运规格化过程中的动态景观和生长统计极限

Gautam Reddy
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引用次数: 0

摘要

多细胞生物体基因调控网络的复杂性使得可解释的低维模型变得非常必要。瓦丁顿(Waddington)提出了一个极具吸引力的几何图形,将细胞分化成不同功能类型的过程形象地描述为动态电位景观上的梯度流动,但目前还不清楚在何种生物约束条件下,这一隐喻在数学上是精确的。在这里,我们表明,在某些通用的生长控制权衡条件下,引导单个细胞达到目标细胞类型分布的生长最大化调控策略是由随时间变化的电位景观来描述的。我们的分析为种群增长到一定规模的目标分布所需的时间提供了一个清晰的界限。我们还展示了如何利用该框架来计算类似于瓦丁顿的表观遗传景观,以及在生长和分化示例模型中的生长曲线。该理论提出了非平衡热力学与发育过程中细胞决策之间的概念联系。
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Dynamic landscapes and statistical limits on growth during cell fate specification
The complexity of gene regulatory networks in multicellular organisms makes interpretable low-dimensional models highly desirable. An attractive geometric picture, attributed to Waddington, visualizes the differentiation of a cell into diverse functional types as gradient flow on a dynamic potential landscape, but it is unclear under what biological constraints this metaphor is mathematically precise. Here, we show that growth-maximizing regulatory strategies that guide a single cell to a target distribution of cell types are described by time-dependent potential landscapes, under certain generic growth-control tradeoffs. Our analysis leads to a sharp bound on the time it takes for a population to grow to a target distribution of a certain size. We show how the framework can be used to compute Waddington-like epigenetic landscapes and growth curves in an illustrative model of growth and differentiation. The theory suggests a conceptual link between nonequilibrium thermodynamics and cellular decision-making during development.
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