CIDACC:用于自动细胞计数的绿藻图像数据集

IF 1 Q3 MULTIDISCIPLINARY SCIENCES Data in Brief Pub Date : 2024-09-14 DOI:10.1016/j.dib.2024.110941
{"title":"CIDACC:用于自动细胞计数的绿藻图像数据集","authors":"","doi":"10.1016/j.dib.2024.110941","DOIUrl":null,"url":null,"abstract":"<div><p>This CIDACC dataset was created to determine the cell population of <em>Chlorella vulgaris</em> microalga during cultivation. <em>Chlorella vulgaris</em> has diverse applications, including use as food supplement, biofuel production, and pollutant removal. High resolution images were collected using a microscope and annotated, focusing on computer vision and machine learning models creation for automatic <em>Chlorella</em> cell detection, counting, size and geometry estimation. The dataset comprises 628 images, organized into hierarchical folders for easy access. Detailed segmentation masks and bounding boxes were generated using external tools enhancing the dataset's utility. The dataset's efficacy was demonstrated through preliminary experiments using deep learning architecture such as object detection and localization algorithms, as well as image segmentation algorithms, achieving high precision and accuracy. This dataset is a valuable tool for advancing computer vision applications in microalgae research and other related fields. The dataset is particularly challenging due to its dynamic nature and the complex correlations it presents across various application domains, including cell analysis in medical research. Its intricacies not only push the boundaries of current computer vision algorithms but also offer significant potential for advancements in diverse fields such as biomedical imaging, environmental monitoring, and biotechnological innovations.</p></div>","PeriodicalId":10973,"journal":{"name":"Data in Brief","volume":null,"pages":null},"PeriodicalIF":1.0000,"publicationDate":"2024-09-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2352340924009041/pdfft?md5=e814508e53d245863cd47a6c02da5348&pid=1-s2.0-S2352340924009041-main.pdf","citationCount":"0","resultStr":"{\"title\":\"CIDACC: Chlorella vulgaris image dataset for automated cell counting\",\"authors\":\"\",\"doi\":\"10.1016/j.dib.2024.110941\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>This CIDACC dataset was created to determine the cell population of <em>Chlorella vulgaris</em> microalga during cultivation. <em>Chlorella vulgaris</em> has diverse applications, including use as food supplement, biofuel production, and pollutant removal. High resolution images were collected using a microscope and annotated, focusing on computer vision and machine learning models creation for automatic <em>Chlorella</em> cell detection, counting, size and geometry estimation. The dataset comprises 628 images, organized into hierarchical folders for easy access. Detailed segmentation masks and bounding boxes were generated using external tools enhancing the dataset's utility. The dataset's efficacy was demonstrated through preliminary experiments using deep learning architecture such as object detection and localization algorithms, as well as image segmentation algorithms, achieving high precision and accuracy. This dataset is a valuable tool for advancing computer vision applications in microalgae research and other related fields. The dataset is particularly challenging due to its dynamic nature and the complex correlations it presents across various application domains, including cell analysis in medical research. Its intricacies not only push the boundaries of current computer vision algorithms but also offer significant potential for advancements in diverse fields such as biomedical imaging, environmental monitoring, and biotechnological innovations.</p></div>\",\"PeriodicalId\":10973,\"journal\":{\"name\":\"Data in Brief\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":1.0000,\"publicationDate\":\"2024-09-14\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.sciencedirect.com/science/article/pii/S2352340924009041/pdfft?md5=e814508e53d245863cd47a6c02da5348&pid=1-s2.0-S2352340924009041-main.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Data in Brief\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2352340924009041\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"MULTIDISCIPLINARY SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Data in Brief","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2352340924009041","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"MULTIDISCIPLINARY SCIENCES","Score":null,"Total":0}
引用次数: 0

摘要

创建该 CIDACC 数据集的目的是为了确定绿藻微藻在培养过程中的细胞数量。小球藻具有多种用途,包括用作食品补充剂、生物燃料生产和去除污染物。我们使用显微镜收集了高分辨率图像并进行了注释,重点是创建计算机视觉和机器学习模型,用于小球藻细胞的自动检测、计数、大小和几何形状估计。数据集包括 628 幅图像,分层归类,便于访问。使用外部工具生成了详细的分割掩膜和边界框,增强了数据集的实用性。通过使用深度学习架构(如物体检测和定位算法以及图像分割算法)进行初步实验,证明了该数据集的功效,实现了高精度和高准确性。该数据集是推进微藻研究和其他相关领域计算机视觉应用的重要工具。由于该数据集的动态性质及其在不同应用领域(包括医学研究中的细胞分析)所呈现的复杂关联性,该数据集尤其具有挑战性。它的复杂性不仅挑战了当前计算机视觉算法的极限,还为生物医学成像、环境监测和生物技术创新等不同领域的进步提供了巨大潜力。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
CIDACC: Chlorella vulgaris image dataset for automated cell counting

This CIDACC dataset was created to determine the cell population of Chlorella vulgaris microalga during cultivation. Chlorella vulgaris has diverse applications, including use as food supplement, biofuel production, and pollutant removal. High resolution images were collected using a microscope and annotated, focusing on computer vision and machine learning models creation for automatic Chlorella cell detection, counting, size and geometry estimation. The dataset comprises 628 images, organized into hierarchical folders for easy access. Detailed segmentation masks and bounding boxes were generated using external tools enhancing the dataset's utility. The dataset's efficacy was demonstrated through preliminary experiments using deep learning architecture such as object detection and localization algorithms, as well as image segmentation algorithms, achieving high precision and accuracy. This dataset is a valuable tool for advancing computer vision applications in microalgae research and other related fields. The dataset is particularly challenging due to its dynamic nature and the complex correlations it presents across various application domains, including cell analysis in medical research. Its intricacies not only push the boundaries of current computer vision algorithms but also offer significant potential for advancements in diverse fields such as biomedical imaging, environmental monitoring, and biotechnological innovations.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Data in Brief
Data in Brief MULTIDISCIPLINARY SCIENCES-
CiteScore
3.10
自引率
0.00%
发文量
996
审稿时长
70 days
期刊介绍: Data in Brief provides a way for researchers to easily share and reuse each other''s datasets by publishing data articles that: -Thoroughly describe your data, facilitating reproducibility. -Make your data, which is often buried in supplementary material, easier to find. -Increase traffic towards associated research articles and data, leading to more citations. -Open up doors for new collaborations. Because you never know what data will be useful to someone else, Data in Brief welcomes submissions that describe data from all research areas.
期刊最新文献
A semi-labelled dataset for fault detection in air handling units from a large-scale office Innovation system functions: Survey data of additive manufacturing enterprises in South Africa Dataset of 16S rRNA gene sequences of 111 healthy and Newcastle disease infected caecal samples from multiple chicken breeds of Pakistan A dental intraoral image dataset of gingivitis for image captioning Multi-datasets for different keyboard key sound recognition
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1