对大量和单细胞 RNA 测序数据的综合分析表明,Schlafen-5 (SLFN5) 是一种新型预后和免疫因子。

IF 4.3 3区 材料科学 Q1 ENGINEERING, ELECTRICAL & ELECTRONIC ACS Applied Electronic Materials Pub Date : 2024-09-09 eCollection Date: 2024-01-01 DOI:10.7150/ijms.97975
Yueh-Jung Wu, Chung-Chieh Chiao, Po-Kai Chuang, Chung-Bao Hsieh, Chou-Yuan Ko, Ching-Chung Ko, Chuan-Fa Chang, Tung-Yuan Chen, Ngoc Uyen Nhi Nguyen, Ching-Cheng Hsu, Tian-Huei Chu, Cheng-Chieh Fang, Hsuan-Yen Tsai, Hsien-Chun Tsai, Gangga Anuraga, Hoang Dang Khoa Ta, Do Thi Minh Xuan, Sachin Kumar, Sanskriti Dey, Fitria Sari Wulandari, Rosario Trijuliamos Manalu, Ngoc Phung Ly, Chih-Yang Wang, Yung-Kuo Lee
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引用次数: 0

摘要

最近的研究进展阐明了 Schlafen(SLFN)家族的多方面作用,包括 SLFN5、SLFN11、SLFN12、SLFN13 和 SLFN14,它们与免疫反应有关。然而,人们对该基因家族在恶性肿瘤发展中的作用知之甚少。本研究旨在通过生物信息学分析,探索 Schlafen 家族基因在结直肠腺癌(COAD)中的诊断和预后潜力。利用大量 RNA 测序和单细胞测序等先进的生物信息学工具,我们对结直肠癌患者与正常组织相比的基因表达、功能富集和生存模式进行了深入分析。在Schlafen家族基因中,SLFN5在COAD组织中的转录水平显著升高,并与不良生存结果相关。此外,SLFN5 通过 Janus 激酶(JAK)/信号转导和转录激活因子(STAT)/干扰素(IFN)-α/β 信号转导调节免疫反应。炎症中的这些趋化因子与糖尿病和新陈代谢有关,表明它们参与了 COAD 进展过程中细胞能量的改变。此外,免疫细胞解卷积分析表明,SLFN5 的表达与调节性 T 细胞(Tregs)等免疫相关细胞群之间存在相关性。这些发现凸显了SLFN5在COAD中的潜在临床意义,并提供了其参与肿瘤微环境和免疫调节的见解。同时,SFLN5与潜在靶向小分子的药物发现数据表明了其对COAD的治疗潜力。总之,目前的研究表明,SFLN5 在肿瘤发生发展中发挥着关键作用,并可作为 COAD 的前瞻性生物标志物。
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Comprehensive analysis of bulk and single-cell RNA sequencing data reveals Schlafen-5 (SLFN5) as a novel prognosis and immunity.

Recent advancements have elucidated the multifaceted roles of the Schlafen (SLFN) family, including SLFN5, SLFN11, SLFN12, SLFN13, and SLFN14, which are implicated in immunological responses. However, little is known about the roles of this gene family in relation to malignancy development. The current study aimed to explore the diagnostic and prognostic potential of Schlafen family genes in colorectal adenocarcinoma (COAD) through bioinformatics analysis. Leveraging advanced bioinformatics tools of bulk RNA-sequencing and single-cell sequencing, we conducted in-depth analyses of gene expressions, functional enrichment, and survival patterns of patients with colorectal cancer compared to normal tissue. Among Schlafen family genes, the transcription levels of SLFN5 in COAD tissues were significantly elevated and correlated with poor survival outcomes. Furthermore, SLFN5 regulated the immune response via Janus kinase (JAK)/signal transduction and activator of transcription (STAT)/interferon (IFN)-alpha/beta signaling. These chemokines in inflammation are associated with diabetes and metabolism, suggesting their involvement in altered cellular energetics for COAD progress. In addition, an immune cell deconvolution analysis indicated a correlation between SLFN5 expression and immune-related cell populations, such as regulatory T cells (Tregs). These findings highlighted the potential clinical significance of SLFN5 in COAD and provided insights into its involvement in the tumor microenvironment and immune regulation. Meanwhile, the drug discovery data of SFLN5 with potential targeted small molecules suggested its therapeutic potential for COAD. Collectively, the current research demonstrated that SFLN5 play crucial roles in tumor development and serve as a prospective biomarker for COAD.

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