利用聚糖芯片技术深入了解糖生物学和蛋白质-聚糖相互作用组。

IF 6.1 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Molecular & Cellular Proteomics Pub Date : 2024-09-21 DOI:10.1016/j.mcpro.2024.100844
Jamie Heimburg-Molinaro, Akul Y Mehta, Catherine A Tilton, Richard D Cummings
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引用次数: 0

摘要

与蛋白质和脂质相连的聚糖以及以游离形式存在的聚糖具有多种功能,这些功能部分是通过与聚糖结合蛋白(GBPs)的特异性相互作用而激发的。这些蛋白包括凝集素、粘附素、毒素、血凝素、生长因子、酶,但抗体也能结合聚糖。人类和其他动物在其糖蛋白中产生了大量的 GBP 和不同的聚糖,而其他生物,包括噬菌体、微生物、原生动物、真菌和植物,也表达聚糖和 GBP,这些也能与宿主的聚糖相互作用。这可以被称为蛋白质-糖相互作用组,在自然界中可能是巨大的,但迄今为止对它的描述还非常少。了解蛋白质-聚糖相互作用组的广度也是我们了解涉及聚糖的传染病以及与抗体结合到聚糖相关的免疫学的关键。该领域的一项关键技术进步是开发出了聚糖微阵列。这是一种将微量聚糖附着在载玻片或珠子表面的显示技术。这样,就可以用 GBP 和抗体以相对高通量的方法对排列好的聚糖进行检测,其中一种蛋白质可能会与一个或多个不同的聚糖结合。这种结合可以带来有关 GBP 功能、抗体特异性以及蛋白质-聚糖相互作用组中聚糖功能的新见解和新假设。本文重点介绍了目前可用于研究动物糖生物学的各类糖芯片技术,以及这些技术带来突破的实例。(254个字)。
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Insights Into Glycobiology and the Protein-Glycan Interactome Using Glycan Microarray Technologies.

Glycans linked to proteins and lipids and also occurring in free forms have many functions, and these are partly elicited through specific interactions with glycan-binding proteins (GBPs). These include lectins, adhesins, toxins, hemagglutinins, growth factors, and enzymes, but antibodies can also bind glycans. While humans and other animals generate a vast repertoire of GBPs and different glycans in their glycomes, other organisms, including phage, microbes, protozoans, fungi, and plants also express glycans and GBPs, and these can also interact with their host glycans. This can be termed the protein-glycan interactome, and in nature is likely to be vast, but is so far very poorly described. Understanding the breadth of the protein-glycan interactome is also a key to unlocking our understanding of infectious diseases involving glycans, and immunology associated with antibodies binding to glycans. A key technological advance in this area has been the development of glycan microarrays. This is a display technology in which minute quantities of glycans are attached to the surfaces of slides or beads. This allows the arrayed glycans to be interrogated by GBPs and antibodies in a relatively high throughput approach, in which a protein may bind to one or more distinct glycans. Such binding can lead to novel insights and hypotheses regarding both the function of the GBP, the specificity of an antibody and the function of the glycan within the context of the protein-glycan interactome. This article focuses on the types of glycan microarray technologies currently available to study animal glycobiology and examples of breakthroughs aided by these technologies.

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来源期刊
Molecular & Cellular Proteomics
Molecular & Cellular Proteomics 生物-生化研究方法
CiteScore
11.50
自引率
4.30%
发文量
131
审稿时长
84 days
期刊介绍: The mission of MCP is to foster the development and applications of proteomics in both basic and translational research. MCP will publish manuscripts that report significant new biological or clinical discoveries underpinned by proteomic observations across all kingdoms of life. Manuscripts must define the biological roles played by the proteins investigated or their mechanisms of action. The journal also emphasizes articles that describe innovative new computational methods and technological advancements that will enable future discoveries. Manuscripts describing such approaches do not have to include a solution to a biological problem, but must demonstrate that the technology works as described, is reproducible and is appropriate to uncover yet unknown protein/proteome function or properties using relevant model systems or publicly available data. Scope: -Fundamental studies in biology, including integrative "omics" studies, that provide mechanistic insights -Novel experimental and computational technologies -Proteogenomic data integration and analysis that enable greater understanding of physiology and disease processes -Pathway and network analyses of signaling that focus on the roles of post-translational modifications -Studies of proteome dynamics and quality controls, and their roles in disease -Studies of evolutionary processes effecting proteome dynamics, quality and regulation -Chemical proteomics, including mechanisms of drug action -Proteomics of the immune system and antigen presentation/recognition -Microbiome proteomics, host-microbe and host-pathogen interactions, and their roles in health and disease -Clinical and translational studies of human diseases -Metabolomics to understand functional connections between genes, proteins and phenotypes
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