描述稳定的五种微生物群落,用于实验进化和生态学。

IF 2.6 4区 生物学 Q3 MICROBIOLOGY Microbiology-Sgm Pub Date : 2024-09-01 DOI:10.1099/mic.0.001489
Meaghan Castledine, Joseph Pennycook, Arthur Newbury, Luke Lear, Zoltan Erdos, Rai Lewis, Suzanne Kay, Dirk Sanders, David Sünderhauf, Angus Buckling, Elze Hesse, Daniel Padfield
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引用次数: 0

摘要

由于模式微生物群落易于操作,生成时间快,可以进行大规模、高通量的实验,因此经常被用来检验生态和进化理论。大多数模式微生物群落的一个关键假设是它们能稳定共存,但这一假设很少得到实验验证。在这里,我们报告了从土壤微生物元群落中(分解)组装出的五种微生物群落,该群落可用于未来的实验。通过稀有物种相互入侵实验,我们发现所有物种都能共存,并证明该群落能长期(约 600 代)保持稳定。对未来工作至关重要的是,我们表明,即使在共培养超过 1 年后,每个物种仍可通过其板块形态进行识别。我们描述了成对的物种相互作用,并为每个物种生成了高质量的参考基因组。这个稳定的五物种群落可用于检验微生物生态学和进化中的关键问题。
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Characterizing a stable five-species microbial community for use in experimental evolution and ecology.

Model microbial communities are regularly used to test ecological and evolutionary theory as they are easy to manipulate and have fast generation times, allowing for large-scale, high-throughput experiments. A key assumption for most model microbial communities is that they stably coexist, but this is rarely tested experimentally. Here we report the (dis)assembly of a five-species microbial community from a metacommunity of soil microbes that can be used for future experiments. Using reciprocal invasion-from-rare experiments we show that all species can coexist and we demonstrate that the community is stable for a long time (~600 generations). Crucially for future work, we show that each species can be identified by their plate morphologies, even after >1 year in co-culture. We characterise pairwise species interactions and produce high-quality reference genomes for each species. This stable five-species community can be used to test key questions in microbial ecology and evolution.

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来源期刊
Microbiology-Sgm
Microbiology-Sgm 生物-微生物学
CiteScore
4.60
自引率
7.10%
发文量
132
审稿时长
3.0 months
期刊介绍: We publish high-quality original research on bacteria, fungi, protists, archaea, algae, parasites and other microscopic life forms. Topics include but are not limited to: Antimicrobials and antimicrobial resistance Bacteriology and parasitology Biochemistry and biophysics Biofilms and biological systems Biotechnology and bioremediation Cell biology and signalling Chemical biology Cross-disciplinary work Ecology and environmental microbiology Food microbiology Genetics Host–microbe interactions Microbial methods and techniques Microscopy and imaging Omics, including genomics, proteomics and metabolomics Physiology and metabolism Systems biology and synthetic biology The microbiome.
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