胆囊炎性病变发展为浸润性癌症的分子生物标志物:蛋白质组学方法

0 MEDICINE, RESEARCH & EXPERIMENTAL Biomolecules & biomedicine Pub Date : 2024-12-11 DOI:10.17305/bb.2024.10704
Neetu Rawal, Gururao Hariprasad, Sabyasachi Bandyopadhyay, Nihar Ranjan Dash, Sunil Kumar, Prasenjit Das, Sharmistha Dey, Maroof Ahmad Khan, Amar Ranjan, Anita Chopra, Sundeep Saluja, Showket Hussain, G K Rath, Tanvir Kaur, Pranay Tanwar
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引用次数: 0

摘要

人们对胆囊炎性病变发展为浸润性癌症的过程仍然知之甚少,因此有必要对这一转变过程中的生物标志物进行研究。本研究旨在鉴定和验证与这一进展相关的蛋白质,为胆囊癌(GBC)的潜在诊断生物标志物提供见解。研究人员对 10 例 GBC 和炎症病变样本进行了无标记液相色谱辅助串联质谱(LC-MS/MS)蛋白质组学分析,并进行了技术重复。使用酶联免疫吸附试验(ELISA)对 80 份样本(40 份 GBC 和 40 份炎症病变样本)进行了验证。生物信息学工具分析了蛋白质-蛋白质相互作用(PPI)网络和通路。评估了与临床病理变量的统计相关性。利用实时聚合酶链反应(RT-PCR)研究了mRNA的表达。在分析的 5,714 个蛋白质中,有 621 个有差异表达。三个上调蛋白(S100钙结合蛋白P [S100P]、聚合免疫球蛋白受体[PIGR]和补体C1q结合蛋白[C1QBP])和两个下调蛋白(transgelin [TAGLN]和calponin 1 [CNN1])出现了显著表达。通路分析显示蛋白多糖参与了癌症和糖胺聚糖代谢。蛋白质浓度与临床病理变量之间存在显著相关性。肿瘤大小、淋巴结转移和术前胆红素水平等预后因素与总生存率相关。与 mRNA 分析相比,基于蛋白质的测定显示出更高的分辨率,这表明它们在 GBC 风险分层中的实用性。S100P、PIGR、C1QBP、TAGLN 和 CNN1 成为参与胆囊炎性病变向浸润性癌症发展的潜在蛋白质生物标记物。这些发现为改进胆囊癌的诊断和预后策略带来了希望。
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Molecular biomarkers involved in the progression of gallbladder inflammatory lesions to invasive cancer: A proteomic approach.

The progression of gallbladder inflammatory lesions to invasive cancer remains poorly understood, necessitating research on biomarkers involved in this transition. This study aims to identify and validate proteins associated with this progression, offering insights into potential diagnostic biomarkers for gallbladder cancer (GBC). Label-free liquid chromatography-assisted tandem mass spectrometry (LC-MS/MS) proteomics was performed on samples from ten cases each of GBC and inflammatory lesions, with technical duplicates. Validation was conducted through the enzyme-linked immunosorbent assay (ELISA) using 80 samples (40 GBC and 40 inflammatory lesions). Bioinformatics tools analyzed protein-protein interaction (PPI) networks and pathways. Statistical correlations with clinicopathological variables were assessed. Prognostic evaluation utilized Kaplan-Meier survival analysis and Cox regression analyses. mRNA expressions were studied using real-time-polymerase chain reaction (RT-PCR). Out of 5714 proteins analyzed, 621 were differentially expressed. Three upregulated (the S100 calcium-binding protein P [S100P], polymeric immunoglobulin receptor [PIGR], and complement C1q-binding protein [C1QBP]) and two downregulated (transgelin [TAGLN] and calponin 1 [CNN1]) proteins showed significant expression. Pathway analysis implicated involvement of proteoglycans in cancer and glycosaminoglycan metabolism. Significant correlations were observed between protein concentrations and clinicopathological variables. Prognostic factors, such as tumor size, lymph node metastasis, and preoperative bilirubin levels were associated with overall survival (OS). Protein-based assays demonstrated higher resolution compared to mRNA analysis, suggesting their utility in GBC risk stratification. S100P, PIGR, C1QBP, TAGLN, and CNN1 emerge as potential protein-based biomarkers involved in the progression from gallbladder inflammatory lesions to invasive cancer. These findings hold promise for improved diagnostic and prognostic strategies in GBC management.

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