憩室炎多基因风险评分的多种族可转移性。

IF 3.3 Q2 GASTROENTEROLOGY & HEPATOLOGY BMJ Open Gastroenterology Pub Date : 2024-09-23 DOI:10.1136/bmjgast-2024-001474
Thomas E Ueland, Jonathan D Mosley, Christopher Neylan, John P Shelley, Jamie Robinson, Eric R Gamazon, Lillias Maguire, Richard Peek, Alexander T Hawkins
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引用次数: 0

摘要

目的:憩室疾病的多基因风险评分(PRS)必须在不同的队列中进行评估。我们试图探索整个表型组的共同遗传易感性,并评估与欧洲、非洲和美国混血参考样本基因相似的个体的风险分层:方法:在 "我们所有人研究计划 "中应用了 44 个变体的 PRS。全表型关联研究(Phenome-wide association studies,PheWAS)确定了与憩室疾病遗传易感性增高相关的条件。为了评估 PRS 在风险分层中的作用,将无症状憩室炎和严重憩室炎的逻辑回归模型与带有年龄、性别、体重指数、吸烟和主成分等协变量的基础模型进行了比较。使用接收者操作特征曲线下面积(AUROC)和纳格尔克R2对结果进行评估:结果:PheWAS 的队列由 181 719 人组成,风险建模的队列由 50 037 人组成。PheWAS确定了与憩室疾病、结缔组织疾病和疝气的关联。在不同血统群体中,相对于对照组,PRS 增加一个 SD 值与更高的严重几率(OR 值范围(95% CI)为 1.60(1.27 至 2.02)至 1.86(1.42 至 2.42))和症状性憩室炎几率((95% CI)为 1.27(1.10 至 1.46)至 1.66(1.55 至 1.79))相关。欧洲模型的AUROC和Nagelkerke's R2最高(AUROC (95% CI) 0.78 (0.75 to 0.81); R2 0.25)。PRS的R2最大增加了0.034,AUROC略有改善:结论:在控制已知风险因素的情况下,憩室疾病 PRS 与严重病症之间的关联在不同队列中持续存在。模型性能有了相对改善,但绝对变化幅度不大。
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Multiancestry transferability of a polygenic risk score for diverticulitis.

Objective: Polygenic risk scores (PRS) for diverticular disease must be evaluated in diverse cohorts. We sought to explore shared genetic predisposition across the phenome and to assess risk stratification in individuals genetically similar to European, African and Admixed-American reference samples.

Methods: A 44-variant PRS was applied to the All of Us Research Program. Phenome-wide association studies (PheWAS) identified conditions linked with heightened genetic susceptibility to diverticular disease. To evaluate the PRS in risk stratification, logistic regression models for symptomatic and for severe diverticulitis were compared with base models with covariates of age, sex, body mass index, smoking and principal components. Performance was assessed using area under the receiver operating characteristic curves (AUROC) and Nagelkerke's R2.

Results: The cohort comprised 181 719 individuals for PheWAS and 50 037 for risk modelling. PheWAS identified associations with diverticular disease, connective tissue disease and hernias. Across ancestry groups, one SD PRS increase was consistently associated with greater odds of severe (range of ORs (95% CI) 1.60 (1.27 to 2.02) to 1.86 (1.42 to 2.42)) and of symptomatic diverticulitis ((95% CI) 1.27 (1.10 to 1.46) to 1.66 (1.55 to 1.79)) relative to controls. European models achieved the highest AUROC and Nagelkerke's R2 (AUROC (95% CI) 0.78 (0.75 to 0.81); R2 0.25). The PRS provided a maximum R2 increase of 0.034 and modest AUROC improvement.

Conclusion: Associations between a diverticular disease PRS and severe presentations persisted in diverse cohorts when controlling for known risk factors. Relative improvements in model performance were observed, but absolute change magnitudes were modest.

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来源期刊
BMJ Open Gastroenterology
BMJ Open Gastroenterology GASTROENTEROLOGY & HEPATOLOGY-
CiteScore
5.90
自引率
3.20%
发文量
68
审稿时长
2 weeks
期刊介绍: BMJ Open Gastroenterology is an online-only, peer-reviewed, open access gastroenterology journal, dedicated to publishing high-quality medical research from all disciplines and therapeutic areas of gastroenterology. It is the open access companion journal of Gut and is co-owned by the British Society of Gastroenterology. The journal publishes all research study types, from study protocols to phase I trials to meta-analyses, including small or specialist studies. Publishing procedures are built around continuous publication, publishing research online as soon as the article is ready.
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