开发并验证与斯坦福 A 型主动脉夹层免疫渗透相关的有效诊断模型。

IF 3.3 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Frontiers in bioscience (Landmark edition) Pub Date : 2024-09-06 DOI:10.31083/j.fbl2909318
Xiaoyan Huang, Guoan Zhang, Yangmeng Feng, Xiangrong Zhao, Yaping Li, Fuqiang Liu, Yihan Dong, Jingying Sun, Cuixiang Xu
{"title":"开发并验证与斯坦福 A 型主动脉夹层免疫渗透相关的有效诊断模型。","authors":"Xiaoyan Huang, Guoan Zhang, Yangmeng Feng, Xiangrong Zhao, Yaping Li, Fuqiang Liu, Yihan Dong, Jingying Sun, Cuixiang Xu","doi":"10.31083/j.fbl2909318","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>The deadly cardiovascular condition known as Stanford type A aortic dissection (TAAD) carries a high risk of morbidity and mortality. One important step in the pathophysiology of the condition is the influx of immune cells into the aorta media, which causes medial degeneration. The purpose of this work was to investigate the potential pathogenic significance of immune cell infiltration in TAAD and to test for associated biomarkers.</p><p><strong>Methods: </strong>The National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) database provided the RNA sequencing microarray data (GSE153434, GPL20795, GSE52093). Immune cell infiltration abundance was predicted using ImmuCellAI. GEO2R was used to select differentially expressed genes (DEGs), which were then processed for Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses. Additionally, hub genes linked to immune infiltration were found using functional and pathway enrichment, least absolute shrinkage and selection operator (LASSO), weighted gene co-expression network analysis (WGCNA), and differential expression analysis. Lastly, hub genes were validated and assessed using receiver operating characteristic (ROC) curves in the microarray dataset GSE52093. The hub gene expression and its connection to immune infiltration in TAAD were confirmed using both animal models and clinic data.</p><p><strong>Results: </strong>We identified the most important connections between macrophages, T helper cell 17 (Th17), iTreg cells, B cells, natural killer cells and TAAD. And screened seven hub genes associated with immune cell infiltration: <i>ABCG2</i>, <i>FAM20C</i>, <i>ELL2</i>, <i>MTHFD2</i>, <i>ANKRD6</i>, <i>GLRX</i>, and <i>CDCP1</i>. The diagnostic model in TAAD diagnosis with the area under ROC (AUC) was 0.996, and the sensitivity was 99.21%, the specificity was 98.67%, which demonstrated a surprisingly strong diagnostic power of TAAD in the validation datasets. The expression pattern of four hub DEGs (<i>ABCG2</i>, <i>FAM20C</i>, <i>MTHFD2</i>, <i>CDCP1</i>) in clinic samples and animal models matched bioinformatics analysis, and <i>ABCG2</i>, <i>FAM20C</i>, <i>MTHFD2</i> up-regulation, and the of <i>CDCP1</i> down-regulation were also linked to poor cardiovascular function.</p><p><strong>Conclusions: </strong>This study developed and verified an effective diagnostic model linked to immune infiltration in TAAD, providing new approaches to studying the potential pathogenesis of TAAD and discovering new medication intervention targets.</p>","PeriodicalId":73069,"journal":{"name":"Frontiers in bioscience (Landmark edition)","volume":"29 9","pages":"318"},"PeriodicalIF":3.3000,"publicationDate":"2024-09-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Developing and Verifying an Effective Diagnostic Model Linked to Immune Infiltration in Stanford Type A Aortic Dissection.\",\"authors\":\"Xiaoyan Huang, Guoan Zhang, Yangmeng Feng, Xiangrong Zhao, Yaping Li, Fuqiang Liu, Yihan Dong, Jingying Sun, Cuixiang Xu\",\"doi\":\"10.31083/j.fbl2909318\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Background: </strong>The deadly cardiovascular condition known as Stanford type A aortic dissection (TAAD) carries a high risk of morbidity and mortality. One important step in the pathophysiology of the condition is the influx of immune cells into the aorta media, which causes medial degeneration. The purpose of this work was to investigate the potential pathogenic significance of immune cell infiltration in TAAD and to test for associated biomarkers.</p><p><strong>Methods: </strong>The National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) database provided the RNA sequencing microarray data (GSE153434, GPL20795, GSE52093). Immune cell infiltration abundance was predicted using ImmuCellAI. GEO2R was used to select differentially expressed genes (DEGs), which were then processed for Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses. Additionally, hub genes linked to immune infiltration were found using functional and pathway enrichment, least absolute shrinkage and selection operator (LASSO), weighted gene co-expression network analysis (WGCNA), and differential expression analysis. Lastly, hub genes were validated and assessed using receiver operating characteristic (ROC) curves in the microarray dataset GSE52093. The hub gene expression and its connection to immune infiltration in TAAD were confirmed using both animal models and clinic data.</p><p><strong>Results: </strong>We identified the most important connections between macrophages, T helper cell 17 (Th17), iTreg cells, B cells, natural killer cells and TAAD. And screened seven hub genes associated with immune cell infiltration: <i>ABCG2</i>, <i>FAM20C</i>, <i>ELL2</i>, <i>MTHFD2</i>, <i>ANKRD6</i>, <i>GLRX</i>, and <i>CDCP1</i>. The diagnostic model in TAAD diagnosis with the area under ROC (AUC) was 0.996, and the sensitivity was 99.21%, the specificity was 98.67%, which demonstrated a surprisingly strong diagnostic power of TAAD in the validation datasets. The expression pattern of four hub DEGs (<i>ABCG2</i>, <i>FAM20C</i>, <i>MTHFD2</i>, <i>CDCP1</i>) in clinic samples and animal models matched bioinformatics analysis, and <i>ABCG2</i>, <i>FAM20C</i>, <i>MTHFD2</i> up-regulation, and the of <i>CDCP1</i> down-regulation were also linked to poor cardiovascular function.</p><p><strong>Conclusions: </strong>This study developed and verified an effective diagnostic model linked to immune infiltration in TAAD, providing new approaches to studying the potential pathogenesis of TAAD and discovering new medication intervention targets.</p>\",\"PeriodicalId\":73069,\"journal\":{\"name\":\"Frontiers in bioscience (Landmark edition)\",\"volume\":\"29 9\",\"pages\":\"318\"},\"PeriodicalIF\":3.3000,\"publicationDate\":\"2024-09-06\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Frontiers in bioscience (Landmark edition)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.31083/j.fbl2909318\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Frontiers in bioscience (Landmark edition)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.31083/j.fbl2909318","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

背景:斯坦福A型主动脉夹层(TAAD)是一种致命的心血管疾病,发病率和死亡率都很高。该病症病理生理学的一个重要步骤是免疫细胞涌入主动脉中层,导致中层变性。这项工作的目的是研究免疫细胞浸润在 TAAD 中的潜在致病意义,并检测相关的生物标志物:美国国家生物技术信息中心(NCBI)基因表达总库(GEO)数据库提供了RNA测序芯片数据(GSE153434、GPL20795、GSE52093)。使用 ImmuCellAI 预测免疫细胞浸润丰度。使用 GEO2R 挑选差异表达基因(DEG),然后对其进行基因本体(GO)和京都基因组百科全书(KEGG)通路分析。此外,还利用功能和通路富集、最小绝对收缩和选择算子(LASSO)、加权基因共表达网络分析(WGCNA)和差异表达分析找到了与免疫浸润相关的枢纽基因。最后,在微阵列数据集 GSE52093 中使用接收者操作特征曲线(ROC)对中心基因进行了验证和评估。利用动物模型和临床数据证实了中心基因的表达及其与 TAAD 免疫浸润的联系:结果:我们发现了巨噬细胞、T辅助细胞17(Th17)、iTreg细胞、B细胞、自然杀伤细胞与TAAD之间最重要的联系。并筛选出七个与免疫细胞浸润相关的中枢基因:ABCG2、FAM20C、ELL2、MTHFD2、ANKRD6、GLRX 和 CDCP1。该诊断模型在 TAAD 诊断中的 ROC 下面积(AUC)为 0.996,灵敏度为 99.21%,特异度为 98.67%,在验证数据集中显示出惊人的 TAAD 诊断能力。临床样本和动物模型中四个枢纽DEGs(ABCG2、FAM20C、MTHFD2、CDCP1)的表达模式与生物信息学分析相吻合,ABCG2、FAM20C、MTHFD2的上调和CDCP1的下调也与心血管功能不良有关:本研究建立并验证了与TAAD免疫浸润相关的有效诊断模型,为研究TAAD的潜在发病机制和发现新的药物干预靶点提供了新方法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Developing and Verifying an Effective Diagnostic Model Linked to Immune Infiltration in Stanford Type A Aortic Dissection.

Background: The deadly cardiovascular condition known as Stanford type A aortic dissection (TAAD) carries a high risk of morbidity and mortality. One important step in the pathophysiology of the condition is the influx of immune cells into the aorta media, which causes medial degeneration. The purpose of this work was to investigate the potential pathogenic significance of immune cell infiltration in TAAD and to test for associated biomarkers.

Methods: The National Center for Biotechnology Information (NCBI) Gene Expression Omnibus (GEO) database provided the RNA sequencing microarray data (GSE153434, GPL20795, GSE52093). Immune cell infiltration abundance was predicted using ImmuCellAI. GEO2R was used to select differentially expressed genes (DEGs), which were then processed for Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses. Additionally, hub genes linked to immune infiltration were found using functional and pathway enrichment, least absolute shrinkage and selection operator (LASSO), weighted gene co-expression network analysis (WGCNA), and differential expression analysis. Lastly, hub genes were validated and assessed using receiver operating characteristic (ROC) curves in the microarray dataset GSE52093. The hub gene expression and its connection to immune infiltration in TAAD were confirmed using both animal models and clinic data.

Results: We identified the most important connections between macrophages, T helper cell 17 (Th17), iTreg cells, B cells, natural killer cells and TAAD. And screened seven hub genes associated with immune cell infiltration: ABCG2, FAM20C, ELL2, MTHFD2, ANKRD6, GLRX, and CDCP1. The diagnostic model in TAAD diagnosis with the area under ROC (AUC) was 0.996, and the sensitivity was 99.21%, the specificity was 98.67%, which demonstrated a surprisingly strong diagnostic power of TAAD in the validation datasets. The expression pattern of four hub DEGs (ABCG2, FAM20C, MTHFD2, CDCP1) in clinic samples and animal models matched bioinformatics analysis, and ABCG2, FAM20C, MTHFD2 up-regulation, and the of CDCP1 down-regulation were also linked to poor cardiovascular function.

Conclusions: This study developed and verified an effective diagnostic model linked to immune infiltration in TAAD, providing new approaches to studying the potential pathogenesis of TAAD and discovering new medication intervention targets.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
3.50
自引率
0.00%
发文量
0
期刊最新文献
DLX5 Promotes Radioresistance in Renal Cell Carcinoma by Upregulating c-Myc Expression. Retraction: Huang Y, et al. Sophocarpine inhibits the growth of gastric cancer cells via autophagy and apoptosis. Frontiers in Bioscience-Landmark. 2019; 24: 616-627. CELF6 as an Oncogene in Colorectal Cancer: Targeting Stem-Cell-Like Properties Through Modulation of HOXA5 mRNA Stability. Effects of Arginine Vasopressin on Hippocampal Myelination in an Autism Rat Model: A RNA-seq and Mendelian Randomization Analysis. SENP1 Promotes Caspase-11 Inflammasome Activation and Aggravates Inflammatory Response in Murine Acute Lung Injury Induced by Lipopolysaccharide.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1