作为技术发展功能的人类蛋白质组规模。

Q3 Biochemistry, Genetics and Molecular Biology Biomeditsinskaya khimiya Pub Date : 2024-09-01 DOI:10.18097/PBMC20247005364
E V Sarygina, A S Kozlova, E A Ponomarenko, E V Ilgisonis
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引用次数: 0

摘要

我们对 neXtProt 数据库中与蛋白质编码基因相关的人类蛋白质形态数量、翻译后修饰(PTM)事件、替代剪接(AS)、单氨基酸多态性(SAP)等信息的变化进行了回顾性分析。2016 年,我们小组提出了三个数学模型,用于预测人类蛋白质组中不同蛋白质(蛋白形式)的数量。八年后,我们比较了信息资源的原始数据及其对预测结果的贡献,将差异与蛋白质修饰的实验和生物信息学分析的新方法联系起来。这项工作的目的是更新自2016年以来已鉴定蛋白质形式数据库中记录状况的信息,并确定这些记录数量的变化趋势。根据不同的信息模型,现代实验方法可以鉴定出 500 万到 1.25 亿种不同的蛋白质形式:由于另类剪接、蛋白质组水平上单核苷酸多态性的实施以及翻译后修饰的各种组合而形成的蛋白质。这一结果反映了人类蛋白质组的规模在过去 8 年中增加了 20 倍或更多。
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The human proteome size as a technological development function.

Changes in information on the number of human proteoforms, post-translational modification (PTM) events, alternative splicing (AS), single-amino acid polymorphisms (SAP) associated with protein-coding genes in the neXtProt database have been retrospectively analyzed. In 2016, our group proposed three mathematical models for predicting the number of different proteins (proteoforms) in the human proteome. Eight years later, we compared the original data of the information resources and their contribution to the prediction results, correlating the differences with new approaches to experimental and bioinformatic analysis of protein modifications. The aim of this work is to update information on the status of records in the databases of identified proteoforms since 2016, as well as to identify trends in changes in the quantities of these records. According to various information models, modern experimental methods may identify from 5 to 125 million different proteoforms: the proteins formed due to alternative splicing, the implementation of single nucleotide polymorphisms at the proteomic level, and post-translational modifications in various combinations. This result reflects an increase in the size of the human proteome by 20 or more times over the past 8 years.

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来源期刊
Biomeditsinskaya khimiya
Biomeditsinskaya khimiya Biochemistry, Genetics and Molecular Biology-Biochemistry, Genetics and Molecular Biology (all)
CiteScore
1.30
自引率
0.00%
发文量
49
期刊介绍: The aim of the Russian-language journal "Biomeditsinskaya Khimiya" (Biomedical Chemistry) is to introduce the latest results obtained by scientists from Russia and other Republics of the Former Soviet Union. The Journal will cover all major areas of Biomedical chemistry, including neurochemistry, clinical chemistry, molecular biology of pathological processes, gene therapy, development of new drugs and their biochemical pharmacology, introduction and advertisement of new (biochemical) methods into experimental and clinical medicine etc. The Journal also publish review articles. All issues of journal usually contain invited reviews. Papers written in Russian contain abstract (in English).
期刊最新文献
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