小鼠胼胝体 AKAP12 缺陷的转录组特征

IF 2.3 Q3 BIOCHEMICAL RESEARCH METHODS Bioinformatics and Biology Insights Pub Date : 2024-09-17 eCollection Date: 2024-01-01 DOI:10.1177/11779322241276936
Tomonori Hoshino, Hajime Takase, Hidehiro Ishikawa, Gen Hamanaka, Shintaro Kimura, Norito Fukuda, Ji Hyun Park, Hiroki Nakajima, Hisashi Shirakawa, Akihiro Shindo, Kyu-Won Kim, Irwin H Gelman, Josephine Lok, Ken Arai
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引用次数: 0

摘要

A激酶锚定蛋白12(AKAP12)是一种支架蛋白,与中枢神经系统(包括血脑屏障(BBB)功能)有关。尽管其在胼胝体中的表达水平高于大脑皮层等其他脑区,但 AKAP12 在胼胝体中的作用仍不清楚。在本研究中,我们通过使用 RNA 序列分析(RNA-seq)对 AKAP12 基因敲除(KO)小鼠的胼胝体进行转录组分析,研究了 AKAP12 缺失的影响。我们观察到的变化微乎其微,只有 13 个基因(包括 Akap12 本身)表现出差异表达。值得注意的是,可能参与 BBB 功能的基因 Klf2 和 Sgk1 在 AKAP12 KO 小鼠中下调,在血管细胞中的表达与 Akap12 相似。这些基因表达的变化可能会影响可能与神经系统疾病相关的重要生物通路。我们的研究结果为今后研究 AKAP12 在中枢神经系统中的作用提供了额外的数据集。
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Transcriptomic Profiles of AKAP12 Deficiency in Mouse Corpus Callosum.

A-kinase anchor protein 12 (AKAP12), a scaffold protein, has been implicated in the central nervous system, including blood-brain barrier (BBB) function. Although its expression level in the corpus callosum is higher than in other brain regions, such as the cerebral cortex, the role of AKAP12 in the corpus callosum remains unclear. In this study, we investigate the impact of AKAP12 deficiency by transcriptome analysis using RNA-sequencing (RNA-seq) on the corpus callosum of AKAP12 knockout (KO) mice. We observed minimal changes, with only 13 genes showing differential expression, including Akap12 itself. Notably, Klf2 and Sgk1, genes potentially involved in BBB function, were downregulated in AKAP12 KO mice and expressed in vascular cells similar to Akap12. These changes in gene expression may affect important biological pathways that may be associated with neurological disorders. Our findings provide an additional data set for future research on the role of AKAP12 in the central nervous system.

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来源期刊
Bioinformatics and Biology Insights
Bioinformatics and Biology Insights BIOCHEMICAL RESEARCH METHODS-
CiteScore
6.80
自引率
1.70%
发文量
36
审稿时长
8 weeks
期刊介绍: Bioinformatics and Biology Insights is an open access, peer-reviewed journal that considers articles on bioinformatics methods and their applications which must pertain to biological insights. All papers should be easily amenable to biologists and as such help bridge the gap between theories and applications.
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