检测钩端螺旋体中与抗生素耐药性有关的基因。

IF 2.8 4区 医学 Q2 INFECTIOUS DISEASES Tropical Medicine and Infectious Disease Pub Date : 2024-09-06 DOI:10.3390/tropicalmed9090203
Santiago Pineda, Juliana María Martínez Garro, Jorge Emilio Salazar Flórez, Sergio Agudelo-Pérez, Fernando P Monroy, Ronald Guillermo Peláez Sánchez
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引用次数: 0

摘要

钩端螺旋体病是一种由钩端螺旋体属细菌引起的疾病,人类通常通过接触受感染动物的尿液而感染这种疾病;这种尿液也有可能污染土壤和水体。这种疾病在某些极端情况下会造成致命后果。幸运的是,迄今为止,钩端螺旋体病患者对多西环素和阿奇霉素的治疗反应良好,没有抗生素耐药性病例的报道。然而,随着这类药物的广泛使用,越来越多的细菌(如葡萄球菌和肠球菌)产生了耐药性。本研究的目的是利用生物信息学工具确定钩端螺旋体属中是否存在与抗生素耐药性相关的基因,这在过去还没有进行过。研究人员从 NCBI 的基因库中下载了 69 个已描述的钩端螺旋体物种的全基因组,并使用 CARD(抗生素耐药性综合数据库)和 RAST(使用子系统技术的快速注释)进行了分析。经过详细的基因组搜索,发现了与四种机制相关的 12 个基因:对β-内酰胺酶、万古霉素、氨基糖苷腺苷转移酶以及多种药物外排泵的耐药性。其中一些基因在不同物种之间具有高度多态性,有些基因在同一物种中存在多个拷贝。总之,这项研究为钩端螺旋体属某些物种的基因组中存在与抗生素耐药性相关的基因提供了证据,也是今后进行实验评估以确定这些基因在某些物种和血清型中是否具有转录活性的起点。
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Detection of Genes Related to Antibiotic Resistance in Leptospira.

Leptospirosis is a disease caused by the bacteria of the Leptospira genus, which can usually be acquired by humans through contact with urine from infected animals; it is also possible for this urine to contaminate soils and bodies of water. The disease can have deadly consequences in some extreme cases. Fortunately, until now, patients with leptospirosis have responded adequately to treatment with doxycycline and azithromycin, and no cases of antibiotic resistance have been reported. However, with the extensive use of such medications, more bacteria, such as Staphylococci and Enterococci, are becoming resistant. The purpose of this study is to determine the presence of genes related to antibiotic resistance in the Leptospira genus using bioinformatic tools, which have not been undertaken in the past. Whole genomes from the 69 described Leptospira species were downloaded from NCBI's GeneBank and analyzed using CARD (The Comprehensive Antibiotic Resistant Database) and RAST (Rapid Annotations using Subsystem Technology). After a detailed genomic search, 12 genes associated with four mechanisms were found: resistance to beta-lactamases, vancomycin, aminoglycoside adenylyltransferases, as well as multiple drug efflux pumps. Some of these genes are highly polymorphic among different species, and some of them are present in multiple copies in the same species. In conclusion, this study provides evidence of the presence of genes related to antibiotic resistance in the genomes of some species of the genus Leptospira, and it is the starting point for future experimental evaluation to determine whether these genes are transcriptionally active in some species and serovars.

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来源期刊
Tropical Medicine and Infectious Disease
Tropical Medicine and Infectious Disease Medicine-Public Health, Environmental and Occupational Health
CiteScore
3.90
自引率
10.30%
发文量
353
审稿时长
11 weeks
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