{"title":"对跨越适应谷的可蜕变自适应运动的一般多尺度描述。","authors":"Manuel Esser, Anna Kraut","doi":"10.1007/s00285-024-02143-3","DOIUrl":null,"url":null,"abstract":"<p><p>We consider a stochastic individual-based model of adaptive dynamics on a finite trait graph <math><mrow><mi>G</mi> <mo>=</mo> <mo>(</mo> <mi>V</mi> <mo>,</mo> <mi>E</mi> <mo>)</mo></mrow> </math> . The evolution is driven by a linear birth rate, a density dependent logistic death rate and the possibility of mutations along the directed edges in E. We study the limit of small mutation rates for a simultaneously diverging population size. Closing the gap between Bovier et al. (Ann Appl Probab 29(6):3541-358, 2019) and Coquille et al. (Electron J Probab 26:1-37, 2021) we give a precise description of transitions between evolutionary stable conditions (ESC), where multiple mutations are needed to cross a valley in the fitness landscape. The system shows a metastable behaviour on several divergent time scales, corresponding to the widths of these fitness valleys. We develop the framework of a meta graph that is constituted of ESCs and possible metastable transitions between them. This allows for a concise description of the multi-scale jump chain arising from concatenating several jumps. Finally, for each of the various time scales, we prove the convergence of the population process to a Markov jump process visiting only ESCs of sufficiently high stability.</p>","PeriodicalId":50148,"journal":{"name":"Journal of Mathematical Biology","volume":"89 4","pages":"46"},"PeriodicalIF":2.2000,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11445367/pdf/","citationCount":"0","resultStr":"{\"title\":\"A general multi-scale description of metastable adaptive motion across fitness valleys.\",\"authors\":\"Manuel Esser, Anna Kraut\",\"doi\":\"10.1007/s00285-024-02143-3\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>We consider a stochastic individual-based model of adaptive dynamics on a finite trait graph <math><mrow><mi>G</mi> <mo>=</mo> <mo>(</mo> <mi>V</mi> <mo>,</mo> <mi>E</mi> <mo>)</mo></mrow> </math> . The evolution is driven by a linear birth rate, a density dependent logistic death rate and the possibility of mutations along the directed edges in E. We study the limit of small mutation rates for a simultaneously diverging population size. Closing the gap between Bovier et al. (Ann Appl Probab 29(6):3541-358, 2019) and Coquille et al. (Electron J Probab 26:1-37, 2021) we give a precise description of transitions between evolutionary stable conditions (ESC), where multiple mutations are needed to cross a valley in the fitness landscape. The system shows a metastable behaviour on several divergent time scales, corresponding to the widths of these fitness valleys. We develop the framework of a meta graph that is constituted of ESCs and possible metastable transitions between them. This allows for a concise description of the multi-scale jump chain arising from concatenating several jumps. Finally, for each of the various time scales, we prove the convergence of the population process to a Markov jump process visiting only ESCs of sufficiently high stability.</p>\",\"PeriodicalId\":50148,\"journal\":{\"name\":\"Journal of Mathematical Biology\",\"volume\":\"89 4\",\"pages\":\"46\"},\"PeriodicalIF\":2.2000,\"publicationDate\":\"2024-10-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11445367/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Mathematical Biology\",\"FirstCategoryId\":\"100\",\"ListUrlMain\":\"https://doi.org/10.1007/s00285-024-02143-3\",\"RegionNum\":4,\"RegionCategory\":\"数学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Mathematical Biology","FirstCategoryId":"100","ListUrlMain":"https://doi.org/10.1007/s00285-024-02143-3","RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOLOGY","Score":null,"Total":0}
引用次数: 0
摘要
我们考虑了一个基于随机个体的有限特征图 G = ( V , E ) 上的适应动态模型。演化由线性出生率、依赖密度的对数死亡率以及 E 中有向边的突变可能性驱动。我们研究了同时发散的种群规模下的小突变率极限。为了缩小 Bovier 等人(Ann Appl Probab 29(6):3541-358, 2019)和 Coquille 等人(Electron J Probab 26:1-37, 2021)之间的差距,我们给出了进化稳定条件(ESC)之间过渡的精确描述,在ESC条件下,需要多次突变才能越过适应性景观中的山谷。该系统在几个不同的时间尺度上表现出一种易变行为,这些时间尺度与这些适应度谷的宽度相对应。我们建立了一个元图框架,它由 ESC 和它们之间可能的蜕变构成。这样就可以简明扼要地描述由多个跃迁串联而成的多尺度跃迁链。最后,对于每种不同的时间尺度,我们都证明了种群过程收敛于一个马尔可夫跳跃过程,该过程只访问具有足够高稳定性的ESC。
A general multi-scale description of metastable adaptive motion across fitness valleys.
We consider a stochastic individual-based model of adaptive dynamics on a finite trait graph . The evolution is driven by a linear birth rate, a density dependent logistic death rate and the possibility of mutations along the directed edges in E. We study the limit of small mutation rates for a simultaneously diverging population size. Closing the gap between Bovier et al. (Ann Appl Probab 29(6):3541-358, 2019) and Coquille et al. (Electron J Probab 26:1-37, 2021) we give a precise description of transitions between evolutionary stable conditions (ESC), where multiple mutations are needed to cross a valley in the fitness landscape. The system shows a metastable behaviour on several divergent time scales, corresponding to the widths of these fitness valleys. We develop the framework of a meta graph that is constituted of ESCs and possible metastable transitions between them. This allows for a concise description of the multi-scale jump chain arising from concatenating several jumps. Finally, for each of the various time scales, we prove the convergence of the population process to a Markov jump process visiting only ESCs of sufficiently high stability.
期刊介绍:
The Journal of Mathematical Biology focuses on mathematical biology - work that uses mathematical approaches to gain biological understanding or explain biological phenomena.
Areas of biology covered include, but are not restricted to, cell biology, physiology, development, neurobiology, genetics and population genetics, population biology, ecology, behavioural biology, evolution, epidemiology, immunology, molecular biology, biofluids, DNA and protein structure and function. All mathematical approaches including computational and visualization approaches are appropriate.