从南极洲联合冰川的土壤样本中分离出两个具有生物合成荧光纳米粒子能力的新物种--Rhodococcus navarretei sp.

IF 2.3 3区 生物学 Q4 MICROBIOLOGY International journal of systematic and evolutionary microbiology Pub Date : 2024-10-01 DOI:10.1099/ijsem.0.006536
Valentina Carrasco, Matías Vargas-Reyes, Sebastián Lagos-Moraga, Claudio Dietz-Vargas, Daniela Allendes-Ormazábal, Juan Meza-Inzunza, Fernanda Rojas-Morales, Sebastián Durán-Villegas, Felipe Valenzuela-Ibaceta, Ma Ángeles Cabrera, José M Pérez-Donoso
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引用次数: 0

摘要

从南极洲联合冰川采集的土壤样本中分离出了两株革兰氏染色阳性细菌--EXRC-4A-4T和RC-2-3T。根据 16S rRNA 基因序列相似性,EXRC-4A-4T 菌株被鉴定为属于 Rhodococcus 属,RC-2-3T 菌株被鉴定为属于 Pseudarthrobacter 属。进一步的基因组分析(包括平均核苷酸同一性和数字 DNA-DNA 杂交)表明,这些菌株代表了新的物种。菌株 EXRC-4A-4T 的生长温度为 4 至 28 °C(最适温度为 20 至 28 °C),pH 值为 5.0 至 9.0(最适 pH 值为 6.0),NaCl 含量为 0 至 5.0%(最适 NaCl 含量为 0 至 1%)。菌株 RC-2-3T 的生长温度为 4-28 °C(最适生长温度为 28 °C),pH 值为 6.0-10(最适 pH 值为 7.0),NaCl 含量为 0-5.0%(最适 NaCl 含量为 1%)。EXRC-4A-4T 的脂肪酸组成以 C17:1 ω-7 脂肪酸为主,而 RC-2-3T 的脂肪酸组成以前 C15 :0.基因组序列草案显示,EXRC-4A-4T 和 RC-2-3T 的 DNA G+C 含量分别为 64.6 摩尔%和 65.8 摩尔%。根据这项多相研究,EXRC-4A-4T 和 RC-2-3T 分别代表了 Rhodococcus 属和 Pseudarthrobacter 属中的两个新物种。我们建议将其命名为 Rhodococcus navarretei sp.模式菌株为 Rhodococcus navarretei EXRC-4A-4T 和 Pseudarthrobacter quantipunctorum RC-2-3T。这些菌株已分别以 RGM 3539/LMG 33621 和 RGM 3538/LMG 33620 的条目编号存入 CChRGM 和 BCCM/LMG 培养物保藏中心。
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Rhodococcus navarretei sp. nov. and Pseudarthrobacter quantipunctorum sp. nov., two novel species with the ability to biosynthesize fluorescent nanoparticles, isolated from soil samples at Union Glacier, Antarctica.

Two Gram-stain-positive bacterial strains, EXRC-4A-4T and RC-2-3T, were isolated from soil samples collected at Union Glacier, Antarctica. Based on 16S rRNA gene sequence similarity, strain EXRC-4A-4T was identified as belonging to the genus Rhodococcus, and strain RC-2-3T to the genus Pseudarthrobacter. Further genomic analyses, including average nucleotide identity and digital DNA-DNA hybridization, suggested that these strains represent new species. Strain EXRC-4A-4T exhibited growth at temperatures ranging from 4 to 28 °C (optimum between 20 and 28 °C), at pH 5.0-9.0 (optimum, pH 6.0), and in the presence of 0-5.0% NaCl (optimum between 0 and 1% NaCl). Strain RC-2-3T grew at 4-28 °C (optimum growth at 28 °C), pH 6.0-10 (optimum, pH 7.0) and in the presence of 0-5.0% NaCl (optimum, 1% NaCl). The fatty acid profile of EXRC-4A-4T was dominated by C17:1 ω-7, while that of RC-2-3T was dominated by anteiso-C15 : 0. The draft genome sequences revealed a DNA G+C content of 64.6 mol% for EXRC-4A-4T and 65.8 mol% for RC-2-3T. Based on this polyphasic study, EXRC-4A-4T and RC-2-3T represent two novel species within the genera Rhodococcus and Pseudarthrobacter, respectively. We propose the names Rhodococcus navarretei sp. nov. and Pseudarthrobacter quantipunctorum sp. nov. The type strains are Rhodococcus navarretei EXRC-4A-4T and Pseudarthrobacter quantipunctorum RC-2-3T. These strains have been deposited deposited in the CChRGM and BCCM/LMG culture collections with entry numbers RGM 3539/LMG 33621 and RGM 3538/LMG 33620, respectively.

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来源期刊
CiteScore
5.20
自引率
21.40%
发文量
426
审稿时长
1 months
期刊介绍: Published by the Microbiology Society and owned by the International Committee on Systematics of Prokaryotes (ICSP), a committee of the Bacteriology and Applied Microbiology Division of the International Union of Microbiological Societies, International Journal of Systematic and Evolutionary Microbiology is the leading forum for the publication of novel microbial taxa and the ICSP’s official journal of record for prokaryotic names. The journal welcomes high-quality research on all aspects of microbial evolution, phylogenetics and systematics, encouraging submissions on all prokaryotes, yeasts, microfungi, protozoa and microalgae across the full breadth of systematics including: Identification, characterisation and culture preservation Microbial evolution and biodiversity Molecular environmental work with strong taxonomic or evolutionary content Nomenclature Taxonomy and phylogenetics.
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