Tomás M Coronado, Gabriel Riera, Francesc Rosselló
{"title":"系统发育网络上有根系统发育子网多样性的交换特性。","authors":"Tomás M Coronado, Gabriel Riera, Francesc Rosselló","doi":"10.1007/s00285-024-02142-4","DOIUrl":null,"url":null,"abstract":"<p><p>Faith's Phylogenetic Diversity (PD) on rooted phylogenetic trees satisfies the so-called strong exchange property that guarantees that, for every two sets of leaves of different cardinalities, a leaf can always be moved from the larger set to the smaller set in such a way that the sum of the PD values does not decrease. This strong exchange property entails a simple polynomial-time greedy solution to the PD optimization problem on rooted phylogenetic trees. In this paper we obtain an exchange property for the rooted Phylogenetic Subnet Diversity (rPSD) on rooted phylogenetic networks, which involves a more complicated exchange of leaves. We derive from it a polynomial-time greedy solution to the rPSD optimization problem on rooted semibinary level-2 phylogenetic networks.</p>","PeriodicalId":50148,"journal":{"name":"Journal of Mathematical Biology","volume":"89 5","pages":"48"},"PeriodicalIF":2.2000,"publicationDate":"2024-10-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11452452/pdf/","citationCount":"0","resultStr":"{\"title\":\"An interchange property for the rooted phylogenetic subnet diversity on phylogenetic networks.\",\"authors\":\"Tomás M Coronado, Gabriel Riera, Francesc Rosselló\",\"doi\":\"10.1007/s00285-024-02142-4\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Faith's Phylogenetic Diversity (PD) on rooted phylogenetic trees satisfies the so-called strong exchange property that guarantees that, for every two sets of leaves of different cardinalities, a leaf can always be moved from the larger set to the smaller set in such a way that the sum of the PD values does not decrease. This strong exchange property entails a simple polynomial-time greedy solution to the PD optimization problem on rooted phylogenetic trees. In this paper we obtain an exchange property for the rooted Phylogenetic Subnet Diversity (rPSD) on rooted phylogenetic networks, which involves a more complicated exchange of leaves. We derive from it a polynomial-time greedy solution to the rPSD optimization problem on rooted semibinary level-2 phylogenetic networks.</p>\",\"PeriodicalId\":50148,\"journal\":{\"name\":\"Journal of Mathematical Biology\",\"volume\":\"89 5\",\"pages\":\"48\"},\"PeriodicalIF\":2.2000,\"publicationDate\":\"2024-10-04\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11452452/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Mathematical Biology\",\"FirstCategoryId\":\"100\",\"ListUrlMain\":\"https://doi.org/10.1007/s00285-024-02142-4\",\"RegionNum\":4,\"RegionCategory\":\"数学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Mathematical Biology","FirstCategoryId":"100","ListUrlMain":"https://doi.org/10.1007/s00285-024-02142-4","RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOLOGY","Score":null,"Total":0}
An interchange property for the rooted phylogenetic subnet diversity on phylogenetic networks.
Faith's Phylogenetic Diversity (PD) on rooted phylogenetic trees satisfies the so-called strong exchange property that guarantees that, for every two sets of leaves of different cardinalities, a leaf can always be moved from the larger set to the smaller set in such a way that the sum of the PD values does not decrease. This strong exchange property entails a simple polynomial-time greedy solution to the PD optimization problem on rooted phylogenetic trees. In this paper we obtain an exchange property for the rooted Phylogenetic Subnet Diversity (rPSD) on rooted phylogenetic networks, which involves a more complicated exchange of leaves. We derive from it a polynomial-time greedy solution to the rPSD optimization problem on rooted semibinary level-2 phylogenetic networks.
期刊介绍:
The Journal of Mathematical Biology focuses on mathematical biology - work that uses mathematical approaches to gain biological understanding or explain biological phenomena.
Areas of biology covered include, but are not restricted to, cell biology, physiology, development, neurobiology, genetics and population genetics, population biology, ecology, behavioural biology, evolution, epidemiology, immunology, molecular biology, biofluids, DNA and protein structure and function. All mathematical approaches including computational and visualization approaches are appropriate.