临床实验室的数据流:元数据和 peridata 能否为新的人工智能应用架起桥梁?

IF 3.8 2区 医学 Q1 MEDICAL LABORATORY TECHNOLOGY Clinical chemistry and laboratory medicine Pub Date : 2024-10-07 DOI:10.1515/cclm-2024-0971
Andrea Padoan, Janne Cadamuro, Glynis Frans, Federico Cabitza, Alexander Tolios, Sander De Bruyne, William van Doorn, Johannes Elias, Zeljko Debeljak, Salomon Martin Perez, Habib Özdemir, Anna Carobene
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引用次数: 0

摘要

在过去的几十年里,临床实验室通过使用互联系统和先进软件,大大提高了自身的技术能力。20 世纪 70 年代引入的实验室信息系统(LIS)已转变为复杂的信息技术(IT)组件,与各种数字工具集成,增强了数据检索和交换功能。然而,目前 LIS 的功能还不足以快速保存整个测试过程(TTP)中产生的大量数据,而不仅仅是测试结果。本文讨论了 TTP 数据的定性类型,提出了如何将实验室生成的信息分为两类,即元数据和周边数据。由于元数据和周边数据信息都来自检测过程,因此建议前者用于描述数据的特征,后者用于解释检测结果。将实验室生成的信息细分为元数据或 Peridata,与分析前编码标准化一起,可促进实验室生成的数据符合可查找性、可访问性、互操作性和可重用性(FAIR)原则,从而加强 ML 研究。最后,将元数据和周边数据整合到 LIS 中可以提高数据的可用性,支持临床实用性,并推动医疗保健领域的人工智能模型开发,这强调了标准化数据管理实践的必要性。
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Data flow in clinical laboratories: could metadata and peridata bridge the gap to new AI-based applications?

In the last decades, clinical laboratories have significantly advanced their technological capabilities, through the use of interconnected systems and advanced software. Laboratory Information Systems (LIS), introduced in the 1970s, have transformed into sophisticated information technology (IT) components that integrate with various digital tools, enhancing data retrieval and exchange. However, the current capabilities of LIS are not sufficient to rapidly save the extensive data, generated during the total testing process (TTP), beyond just test results. This opinion paper discusses qualitative types of TTP data, proposing how to divide laboratory-generated information into two categories, namely metadata and peridata. Being both metadata and peridata information derived from the testing process, it is proposed that the first is useful to describe the characteristics of data, while the second is for interpretation of test results. Together with standardizing preanalytical coding, the subdivision of laboratory-generated information into metadata or peridata might enhance ML studies, also by facilitating the adherence of laboratory-derived data to the Findability, Accessibility, Interoperability, and Reusability (FAIR) principles. Finally, integrating metadata and peridata into LIS can improve data usability, support clinical utility, and advance AI model development in healthcare, emphasizing the need for standardized data management practices.

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来源期刊
Clinical chemistry and laboratory medicine
Clinical chemistry and laboratory medicine 医学-医学实验技术
CiteScore
11.30
自引率
16.20%
发文量
306
审稿时长
3 months
期刊介绍: Clinical Chemistry and Laboratory Medicine (CCLM) publishes articles on novel teaching and training methods applicable to laboratory medicine. CCLM welcomes contributions on the progress in fundamental and applied research and cutting-edge clinical laboratory medicine. It is one of the leading journals in the field, with an impact factor over 3. CCLM is issued monthly, and it is published in print and electronically. CCLM is the official journal of the European Federation of Clinical Chemistry and Laboratory Medicine (EFLM) and publishes regularly EFLM recommendations and news. CCLM is the official journal of the National Societies from Austria (ÖGLMKC); Belgium (RBSLM); Germany (DGKL); Hungary (MLDT); Ireland (ACBI); Italy (SIBioC); Portugal (SPML); and Slovenia (SZKK); and it is affiliated to AACB (Australia) and SFBC (France). Topics: - clinical biochemistry - clinical genomics and molecular biology - clinical haematology and coagulation - clinical immunology and autoimmunity - clinical microbiology - drug monitoring and analysis - evaluation of diagnostic biomarkers - disease-oriented topics (cardiovascular disease, cancer diagnostics, diabetes) - new reagents, instrumentation and technologies - new methodologies - reference materials and methods - reference values and decision limits - quality and safety in laboratory medicine - translational laboratory medicine - clinical metrology Follow @cclm_degruyter on Twitter!
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