肿瘤侵袭趋化模型的高精度正性保留有限差分近似值

IF 1.4 4区 生物学 Q4 BIOCHEMICAL RESEARCH METHODS Journal of Computational Biology Pub Date : 2024-10-07 DOI:10.1089/cmb.2023.0316
Lin Zhang, Jigen Peng, Yongbin Ge, Haiyang Li, Yuchao Tang
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引用次数: 0

摘要

对肿瘤侵袭的复杂演化过程进行数值模拟,对于深入探索肿瘤生长和转移的生物习性现象具有极其重要的作用。鉴于低精度数值方法往往误差大、分辨率低,要想得到高分辨率的模拟结果,就必须使用非常精细的网格,这就导致了大量的计算成本。在本文中,我们致力于开发一类高精度的正向保留有限差分方法来求解肿瘤侵袭的趋化模型。首先,提出了两种无条件稳定的隐式紧凑差分方案来求解该模型;其次,分析了新方案的局部截断误差,结果表明它们在时间上具有二阶精度,在空间上具有四阶精度;最后,通过多次数值实验验证了所提方法的准确性、稳定性和保正性,并对肿瘤侵袭随时间的演变现象进行了数值模拟和分析。
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High-Accuracy Positivity-Preserving Finite Difference Approximations of the Chemotaxis Model for Tumor Invasion.

Numerical simulation of the complex evolution process for tumor invasion plays an extremely important role in-depth exploring the bio-taxis phenomena of tumor growth and metastasis. In view of the fact that low-accuracy numerical methods often have large errors and low resolution, very refined grids have to be used if we want to get high-resolution simulating results, which leads to a great deal of computational cost. In this paper, we are committed to developing a class of high-accuracy positivity-preserving finite difference methods to solve the chemotaxis model for tumor invasion. First, two unconditionally stable implicit compact difference schemes for solving the model are proposed; second, the local truncation errors of the new schemes are analyzed, which show that they have second-order accuracy in time and fourth-order accuracy in space; third, based on the proposed schemes, the high-accuracy numerical integration idea of binary functions is employed to structure a linear compact weighting formula that guarantees fourth-order accuracy and nonnegative, and then a positivity-preserving and time-marching algorithm is established; and finally, the accuracy, stability, and positivity-preserving of the proposed methods are verified by several numerical experiments, and the evolution phenomena of tumor invasion over time are numerically simulated and analyzed.

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来源期刊
Journal of Computational Biology
Journal of Computational Biology 生物-计算机:跨学科应用
CiteScore
3.60
自引率
5.90%
发文量
113
审稿时长
6-12 weeks
期刊介绍: Journal of Computational Biology is the leading peer-reviewed journal in computational biology and bioinformatics, publishing in-depth statistical, mathematical, and computational analysis of methods, as well as their practical impact. Available only online, this is an essential journal for scientists and students who want to keep abreast of developments in bioinformatics. Journal of Computational Biology coverage includes: -Genomics -Mathematical modeling and simulation -Distributed and parallel biological computing -Designing biological databases -Pattern matching and pattern detection -Linking disparate databases and data -New tools for computational biology -Relational and object-oriented database technology for bioinformatics -Biological expert system design and use -Reasoning by analogy, hypothesis formation, and testing by machine -Management of biological databases
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