SUBGROUPS:毕尔巴鄂晶体学服务器的计算机工具,用于研究假对称或扭曲结构。

IF 6.1 3区 材料科学 Q1 Biochemistry, Genetics and Molecular Biology Journal of Applied Crystallography Pub Date : 2024-10-01 DOI:10.1107/S1600576724008070
Emre S Tasci, Luis Elcoro, J Manuel Perez-Mato, Gemma de la Flor, Mois I Aroyo
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引用次数: 0

摘要

SUBGROUPS 是毕尔巴鄂晶体学服务器 (https://www.cryst.ehu.es/) 上的一个免费在线程序。只要知道变形结构和母体结构的晶格之间的关系,该程序就能探索高对称性母体结构变形后可能产生的所有对称性。程序会计算母空间群中符合这种关系的所有子群。所需的最小输入是母结构的空间群信息以及扭曲或假对称结构的单元格与母结构单元格的关系。另外,还可以引入在衍射数据中观察到的波向量来描述变形特征。还可以添加其他条件,包括与空间群表示相关的滤波器。该程序可提供所有子群的详细信息,包括群-子群层次图。如果上传了母体高对称结构的晶体学信息框架(CIF)文件,程序会生成母体结构在每个所选低对称性下描述的 CIF 文件。这些 CIF 文件可用作在这些可能的对称性下细化扭曲结构的起点。它们还可用于密度泛函理论计算或任何其他类型的分析。下面通过几个例子来说明该程序的功能和效率。
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SUBGROUPS: a computer tool at the Bilbao Crystallographic Server for the study of pseudo-symmetric or distorted structures.

SUBGROUPS is a free online program at the Bilbao Crystallographic Server (https://www.cryst.ehu.es/). It permits the exploration of all possible symmetries resulting from the distortion of a higher-symmetry parent structure, provided that the relation between the lattices of the distorted and parent structures is known. The program calculates all the subgroups of the parent space group which comply with this relation. The required minimal input is the space-group information of the parent structure and the relation of the unit cell of the distorted or pseudo-symmetric structure with that of the parent structure. Alternatively, the wavevector(s) observed in the diffraction data characterizing the distortion can be introduced. Additional conditions can be added, including filters related to space-group representations. The program provides very detailed information on all the subgroups, including group-subgroup hierarchy graphs. If a Crystallographic Information Framework (CIF) file of the parent high-symmetry structure is uploaded, the program generates CIF files of the parent structure described under each of the chosen lower symmetries. These CIF files may then be used as starting points for the refinement of the distorted structure under these possible symmetries. They can also be used for density functional theory calculations or for any other type of analysis. The power and efficiency of the program are illustrated with a few examples.

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来源期刊
CiteScore
10.00
自引率
3.30%
发文量
178
审稿时长
4.7 months
期刊介绍: Many research topics in condensed matter research, materials science and the life sciences make use of crystallographic methods to study crystalline and non-crystalline matter with neutrons, X-rays and electrons. Articles published in the Journal of Applied Crystallography focus on these methods and their use in identifying structural and diffusion-controlled phase transformations, structure-property relationships, structural changes of defects, interfaces and surfaces, etc. Developments of instrumentation and crystallographic apparatus, theory and interpretation, numerical analysis and other related subjects are also covered. The journal is the primary place where crystallographic computer program information is published.
期刊最新文献
SUBGROUPS: a computer tool at the Bilbao Crystallographic Server for the study of pseudo-symmetric or distorted structures. Characterization of sub-micrometre-sized voids in fixed human brain tissue using scanning X-ray microdiffraction. Electronic angle focusing for neutron time-of-flight powder diffractometers. Link between b.c.c.-f.c.c. orientation relationship and austenite morphology in CF8M stainless steel. In situ counter-diffusion crystallization and long-term crystal preservation in microfluidic fixed targets for serial crystallography.
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