QSPRmodeler - 用于分子预测分析的开源应用程序。

IF 2.8 Q2 MATHEMATICAL & COMPUTATIONAL BIOLOGY Frontiers in bioinformatics Pub Date : 2024-09-23 eCollection Date: 2024-01-01 DOI:10.3389/fbinf.2024.1441024
Rafał A Bachorz, Damian Nowak, Marcin Ratajewski
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引用次数: 0

摘要

药物设计过程可以成功地利用各种硅学方法来支持。其中一些方法面向分子特性预测,这是药物发现早期阶段的关键步骤。在实验验证之前,候选药物通常要与已知实验数据进行比较。从技术上讲,这可以通过机器学习方法来实现,即使用选定的实验数据来训练预测模型。所提出的 Python 软件就是为此目的而设计的。它支持分子数据处理的整个工作流程,从原始数据准备到分子描述符创建和机器学习模型训练。由此产生的模型的预测能力经过了内部和外部的仔细验证。这些模型可轻松应用于新化合物,包括涉及生成方法的更复杂的工作流程。
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QSPRmodeler - An open source application for molecular predictive analytics.

The drug design process can be successfully supported using a variety of in silico methods. Some of these are oriented toward molecular property prediction, which is a key step in the early drug discovery stage. Before experimental validation, drug candidates are usually compared with known experimental data. Technically, this can be achieved using machine learning approaches, in which selected experimental data are used to train the predictive models. The proposed Python software is designed for this purpose. It supports the entire workflow of molecular data processing, starting from raw data preparation followed by molecular descriptor creation and machine learning model training. The predictive capabilities of the resulting models were carefully validated internally and externally. These models can be easily applied to new compounds, including within more complex workflows involving generative approaches.

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