描述二硫键:从密度泛函理论到 "乐高积木 "方法。

IF 2.7 2区 化学 Q3 CHEMISTRY, PHYSICAL The Journal of Physical Chemistry A Pub Date : 2024-10-31 Epub Date: 2024-10-18 DOI:10.1021/acs.jpca.4c05198
Silvia Alessandrini, Hexu Ye, Malgorzata Biczysko, Cristina Puzzarini
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引用次数: 0

摘要

我们考虑了含有二硫键 RSSR 的部分分子物种,包括二硫化氢 H2S2(R = H)和 R = C6H5 的二苯基二硫化物。这项工作有两个目的:(i) 研究不同的计算方法,以便以可承受的成本推导出精确的平衡结构;(ii) 利用第一个目标的结果,为以密度泛函理论为基础的成本更低的方法提供基准。在用于精确确定几何结构的策略中,半实验方法与降维 VPT2 模型相结合,但并未取得令人满意的结果。相反,所谓的 "乐高砖块 "方法却非常有效,尽管所研究的系统具有灵活性。关于这项工作的第二个目标,重点主要放在 S-S 键及其相关的结构参数上。在所测试的函数中,PBE0(-D3BJ)、M06-2X(-D3) 和 DSD-PBEP86-D3BJ 被认为是性能最好的函数。
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Describing the Disulfide Bond: From the Density Functional Theory and Back through the "Lego Brick" Approach.

Selected molecular species containing the disulfide bond, RSSR, have been considered, these ranging from hydrogen disulfide, H2S2 (R = H), to diphenyl disulfide with R = C6H5. The aim of this work is two-fold: (i) to investigate different computational approaches in order to derive accurate equilibrium structures at an affordable cost, (ii) to employ the results from the first goal in order to benchmark cheaper methodologies rooted in the density functional theory. Among the strategies used for the accurate geometrical determinations, the semiexperimental approach has been exploited in combination with a reduced-dimensionality VPT2 model, without however obtaining satisfactory results. Instead, the so-called "Lego brick" approach turned out to be very effective despite the flexibility of the systems investigated. Concerning the second target of this work, the focus was mainly on the S-S bond and the structural parameters related to it. Among those tested, PBE0(-D3BJ), M06-2X(-D3) and DSD-PBEP86-D3BJ have been found to be the best-performing functionals.

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来源期刊
The Journal of Physical Chemistry A
The Journal of Physical Chemistry A 化学-物理:原子、分子和化学物理
CiteScore
5.20
自引率
10.30%
发文量
922
审稿时长
1.3 months
期刊介绍: The Journal of Physical Chemistry A is devoted to reporting new and original experimental and theoretical basic research of interest to physical chemists, biophysical chemists, and chemical physicists.
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