揭示隐藏的反应:对干旱和氮挑战下矮竹根瘤菌群的元基因组学洞察

IF 4.9 2区 生物学 International Journal of Molecular Sciences Pub Date : 2024-10-08 DOI:10.3390/ijms251910790
Jun Xiang, Nannan Zhang, Jiangtao Li, Yue Zhu, Tingying Cao, Yanjie Wang
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摘要

矮竹是大熊猫的重要食物来源。由于根系浅且生长迅速,矮竹对干旱胁迫和氮沉降高度敏感,而这两种全球气候变化的主要问题都会影响植物的生长和根圈环境。然而,有关矮竹根圈环境对这两个因素的响应机制的报道很少。因此,本研究研究了干旱胁迫和氮沉降对箭竹根圈土壤理化性质和微生物群落组成的影响,并利用元基因组测序分析了参与碳和氮循环的功能基因。干旱胁迫和氮沉积都显著改变了土壤养分含量,但两者的结合对这些指标没有显著影响。氮沉积增加了微生物功能基因 nrfA 的相对丰度,同时降低了 nirK、nosZ、norB 和 nifH 的丰度。干旱胁迫抑制了参与淀粉和蔗糖代谢的关键微生物酶的功能基因,但促进了参与半乳糖代谢、磷酸肌醇代谢和半纤维素降解的功能基因。NO3--N与氮循环功能基因的相关性最高(p < 0.01)。总碳和总氮对参与碳降解的关键酶功能基因的相对丰度影响最大。该研究为全球气候变化下大熊猫栖息地矮竹林的可持续管理和保护提供了理论和技术参考。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Unveiling the Hidden Responses: Metagenomic Insights into Dwarf Bamboo (Fargesia denudata) Rhizosphere under Drought and Nitrogen Challenges.

Dwarf bamboo (Fargesia denudata) is a crucial food source for the giant pandas. With its shallow root system and rapid growth, dwarf bamboo is highly sensitive to drought stress and nitrogen deposition, both major concerns of global climate change affecting plant growth and rhizosphere environments. However, few reports address the response mechanisms of the dwarf bamboo rhizosphere environment to these two factors. Therefore, this study investigated the effects of drought stress and nitrogen deposition on the physicochemical properties and microbial community composition of the arrow bamboo rhizosphere soil, using metagenomic sequencing to analyze functional genes involved in carbon and nitrogen cycles. Both drought stress and nitrogen deposition significantly altered the soil nutrient content, but their combination had no significant impact on these indicators. Nitrogen deposition increased the relative abundance of the microbial functional gene nrfA, while decreasing the abundances of nirK, nosZ, norB, and nifH. Drought stress inhibited the functional genes of key microbial enzymes involved in starch and sucrose metabolism, but promoted those involved in galactose metabolism, inositol phosphate metabolism, and hemicellulose degradation. NO3--N showed the highest correlation with N-cycling functional genes (p < 0.01). Total C and total N had the greatest impact on the relative abundance of key enzyme functional genes involved in carbon degradation. This research provides theoretical and technical references for the sustainable management and conservation of dwarf bamboo forests in giant panda habitats under global climate change.

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期刊介绍: The International Journal of Molecular Sciences (ISSN 1422-0067) provides an advanced forum for chemistry, molecular physics (chemical physics and physical chemistry) and molecular biology. It publishes research articles, reviews, communications and short notes. Our aim is to encourage scientists to publish their theoretical and experimental results in as much detail as possible. Therefore, there is no restriction on the length of the papers or the number of electronics supplementary files. For articles with computational results, the full experimental details must be provided so that the results can be reproduced. Electronic files regarding the full details of the calculation and experimental procedure, if unable to be published in a normal way, can be deposited as supplementary material (including animated pictures, videos, interactive Excel sheets, software executables and others).
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