在被忽视的极端环境--热液区的适应基因组学方面取得的最新进展。

IF 3.9 2区 生物学 Q2 CELL BIOLOGY Plant and Cell Physiology Pub Date : 2024-10-16 DOI:10.1093/pcp/pcae122
Koki Nagasawa, Hiroaki Setoguchi, Shota Sakaguchi
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引用次数: 0

摘要

极端环境和在极端环境中生长的植物(称为极端植物)为研究植物进化出的各种适应机制提供了前景广阔的平台。然而,对极端环境适应性的研究仍局限于模式物种或其近缘物种能够生存的环境。作为一种经常被忽视的极端环境,火口区具有多种有害的非生物压力,包括大气污染(高浓度的 H2S、SO2 和 CO2)、高土壤温度(~60℃)和强土壤酸化(pH=2-3)。这些条件为研究植物的胁迫耐受机制提供了丰富的资料。在这篇综述中,我们重点介绍了近期涉及富马林场适应性的生态学、生理学和基因组学方面的进展,并讨论了未来的研究方向。本文中概述的研究表明,由于在富马结核区发现了极端水平的非生物胁迫,因此富马结核区成为研究未知胁迫耐受机制的无与伦比的野外实验室,需要进一步的基因组评估。一些研究成功地鉴定了一些与富马林场适应性相关的基因,并揭示了其进化意义;然而,这些研究也遇到了一些挑战,如基因组资源有限、与相关物种和/或邻近种群的遗传分化程度较高等。为了克服这些困难,我们建议借鉴其他极端环境的最新研究成果,将生态生理学和基因组学方法结合起来。我们期望,进一步的研究将有助于拓宽我们对生命极限的总体认识。
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Recent advances in adaptation genomics in fumarole fields, an overlooked extreme environment.

Extreme environments and plants thriving in them, known as extremophytes, offer promising platforms for studying the diverse adaptive mechanisms that have evolved in plants. However, research on adaptation to extreme environments is still limited to those environments where model species or their relative can survive. Fumarole fields, an extreme environment often overlooked, are characterized by multi-hazardous abiotic stressors, including atmospheric contamination (high concentration of H2S, SO2, and CO2), high soil temperature (~60℃), and strong soil acidification (pH=2-3). These conditions make fumarole fields a rich source for studying stress tolerance mechanisms in plants. In this review, we highlight the recent ecological, physiological, and genomic advances involved in fumarole field adaptation, and discuss the forward avenues. The studies outlined in this paper demonstrate that the extreme levels of abiotic stressors found in fumarole fields make them unparalleled field laboratories for studying the unknown stress tolerance mechanisms, warranting further genomic assessments. Some studies succeeded in identifying genes associated with fumarole field adaptation and shedding light on evolutionary implications; however, they have also encountered challenges such as limited genome resources and high genetic differentiation from related species and/or neighboring populations. To overcome such difficulties, we propose integrating ecophysiological and genomic approaches, drawing from the recent studies in other extreme environments. We expect that further studies in the fumarole fields will contribute to broadening our general knowledge of the limits of life.

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来源期刊
Plant and Cell Physiology
Plant and Cell Physiology 生物-细胞生物学
CiteScore
8.40
自引率
4.10%
发文量
166
审稿时长
1.7 months
期刊介绍: Plant & Cell Physiology (PCP) was established in 1959 and is the official journal of the Japanese Society of Plant Physiologists (JSPP). The title reflects the journal''s original interest and scope to encompass research not just at the whole-organism level but also at the cellular and subcellular levels. Amongst the broad range of topics covered by this international journal, readers will find the very best original research on plant physiology, biochemistry, cell biology, molecular genetics, epigenetics, biotechnology, bioinformatics and –omics; as well as how plants respond to and interact with their environment (abiotic and biotic factors), and the biology of photosynthetic microorganisms.
期刊最新文献
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