分析高通量检测数据,推进环境化学品对人类生殖毒性的快速筛查。

IF 3.3 4区 医学 Q2 REPRODUCTIVE BIOLOGY Reproductive toxicology Pub Date : 2024-10-11 DOI:10.1016/j.reprotox.2024.108725
Julia R Varshavsky, Juleen Lam, Courtney Cooper, Patrick Allard, Jennifer Fung, Ashwini Oke, Ravinder Kumar, Joshua F Robinson, Tracey J Woodruff
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引用次数: 0

摘要

虽然高通量(HTP)测定法已被提出作为快速评估生殖毒性的平台,但目前还缺乏专门针对生殖系发育/功能和生育能力的成熟测定法。我们评估了酵母(S. cerevisiae)和线虫(C. elegans)HTP 试验在 124 种环境化学物质毒性筛选中的适用领域,确定了它们在识别毒性物质方面的一致性以及与体内生殖毒性的一致性。我们整合了两种模型中生成的数据,并使用简化、半自动化的基准剂量 (BMD) 建模方法对结果进行了比较。然后,我们提取了毒理学参考数据库(ToxRefDB)中与之匹配的化学物质的相关哺乳动物体内数据,并建立了模型。我们使用 BMD 对常见化合物的效力进行了排序,并使用皮尔逊和斯皮尔曼相关系数评估了数据集之间的相关性。我们发现三个数据集之间存在中度到良好的相关性,HTP BMDs 之间的参数相关性和排序相关性分别为 r = 0.48(95 % CI:0.28-1.00,ps = 0.40(p=0.002);r = 0.95(95 % CI:0.76-1.00,p=0.0005)和 rs = 0.89(p=0.006);酵母检测和 ToxRefDB BMDs 之间的 r = 0.81(95 % CI:0.28-1.00,p=0.014)和 rs = 0.75(p=0.033)。我们的研究结果强调了这些 HTP 检测方法在识别具有生殖毒性的环境化学品方面的潜力。利用机器学习方法将这些 HTP 数据集整合到哺乳动物体内预测模型中,可以进一步提高它们在未来快速筛选工作中的预测价值。
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Analyzing high-throughput assay data to advance the rapid screening of environmental chemicals for human reproductive toxicity.

While high-throughput (HTP) assays have been proposed as platforms to rapidly assess reproductive toxicity, there is currently a lack of established assays that specifically address germline development/function and fertility. We assessed the applicability domains of yeast (S. cerevisiae) and nematode (C. elegans) HTP assays in toxicity screening of 124 environmental chemicals, determining their agreement in identifying toxicants and their concordance with reproductive toxicity in vivo. We integrated data generated in the two models and compared results using a streamlined, semi-automated benchmark dose (BMD) modeling approach. We then extracted and modeled relevant mammalian in vivo data available for the matching chemicals included in the Toxicological Reference Database (ToxRefDB). We ranked potencies of common compounds using the BMD and evaluated correlation between the datasets using Pearson and Spearman correlation coefficients. We found moderate to good correlation across the three data sets, with r = 0.48 (95 % CI: 0.28-1.00, p<0.001) and rs = 0.40 (p=0.002) for the parametric and rank order correlations between the HTP BMDs; r = 0.95 (95 % CI: 0.76-1.00, p=0.0005) and rs = 0.89 (p=0.006) between the yeast assay and ToxRefDB BMDs; and r = 0.81 (95 % CI: 0.28-1.00, p=0.014) and rs = 0.75 (p=0.033) between the worm assay and ToxRefDB BMDs. Our findings underscore the potential of these HTP assays to identify environmental chemicals that exhibit reproductive toxicity. Integrating these HTP datasets into mammalian in vivo prediction models using machine learning methods could further enhance their predictive value in future rapid screening efforts.

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来源期刊
Reproductive toxicology
Reproductive toxicology 生物-毒理学
CiteScore
6.50
自引率
3.00%
发文量
131
审稿时长
45 days
期刊介绍: Drawing from a large number of disciplines, Reproductive Toxicology publishes timely, original research on the influence of chemical and physical agents on reproduction. Written by and for obstetricians, pediatricians, embryologists, teratologists, geneticists, toxicologists, andrologists, and others interested in detecting potential reproductive hazards, the journal is a forum for communication among researchers and practitioners. Articles focus on the application of in vitro, animal and clinical research to the practice of clinical medicine. All aspects of reproduction are within the scope of Reproductive Toxicology, including the formation and maturation of male and female gametes, sexual function, the events surrounding the fusion of gametes and the development of the fertilized ovum, nourishment and transport of the conceptus within the genital tract, implantation, embryogenesis, intrauterine growth, placentation and placental function, parturition, lactation and neonatal survival. Adverse reproductive effects in males will be considered as significant as adverse effects occurring in females. To provide a balanced presentation of approaches, equal emphasis will be given to clinical and animal or in vitro work. Typical end points that will be studied by contributors include infertility, sexual dysfunction, spontaneous abortion, malformations, abnormal histogenesis, stillbirth, intrauterine growth retardation, prematurity, behavioral abnormalities, and perinatal mortality.
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