Jin Zhou, Xiang Li, Dawit Demeke, Timothy A Dinh, Yingbao Yang, Andrew R Janowczyk, Jarcy Zee, Lawrence Holzman, Laura Mariani, Krishnendu Chakrabarty, Laura Barisoni, Jeffrey B Hodgin, Kyle J Lafata
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We then developed a multi-class deep learning (DL) framework for segmenting the different intra-arterial compartments (training dataset: 648 arteries from 24 WSIs; testing dataset: 105 arteries from 9 WSIs). Subsequently, we employed radial sampling and made measurements of media and intima thickness as a function of spatially encoded polar coordinates throughout the artery. Pathomic features were extracted from the measurements to collectively describe the arterial wall characteristics. The technique was first validated through numerical analysis of simulated arteries, with systematic deformations applied to study their effect on arterial thickness measurements. We then compared these computationally derived measurements with the pathologists' grading of arteriosclerosis.</p><p><strong>Results: </strong>Numerical validation shows that our measurement technique adeptly captured the decreasing smoothness in the intima and media thickness as the deformation increases in the simulated arteries. Intra-arterial DL segmentations of media, intima, and lumen achieved Dice scores of 0.84, 0.78, and 0.86, respectively. Several significant associations were identified between arteriosclerosis grade and pathomic features using our technique (e.g., intima-media ratio average [ <math><mrow><mi>τ</mi> <mo>=</mo> <mn>0.52</mn></mrow> </math> , <math><mrow><mi>p</mi> <mo><</mo> <mn>0.0001</mn></mrow> </math> ]) through Kendall's tau analysis.</p><p><strong>Conclusions: </strong>We developed a computer vision approach to computationally characterize intra-arterial morphology on digital pathology images and demonstrate its feasibility as a potential computational biomarker of arteriosclerosis.</p>","PeriodicalId":47707,"journal":{"name":"Journal of Medical Imaging","volume":"11 5","pages":"057501"},"PeriodicalIF":1.9000,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11466048/pdf/","citationCount":"0","resultStr":"{\"title\":\"Characterization of arteriosclerosis based on computer-aided measurements of intra-arterial thickness.\",\"authors\":\"Jin Zhou, Xiang Li, Dawit Demeke, Timothy A Dinh, Yingbao Yang, Andrew R Janowczyk, Jarcy Zee, Lawrence Holzman, Laura Mariani, Krishnendu Chakrabarty, Laura Barisoni, Jeffrey B Hodgin, Kyle J Lafata\",\"doi\":\"10.1117/1.JMI.11.5.057501\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Purpose: </strong>Our purpose is to develop a computer vision approach to quantify intra-arterial thickness on digital pathology images of kidney biopsies as a computational biomarker of arteriosclerosis.</p><p><strong>Approach: </strong>The severity of the arteriosclerosis was scored (0 to 3) in 753 arteries from 33 trichrome-stained whole slide images (WSIs) of kidney biopsies, and the outer contours of the media, intima, and lumen were manually delineated by a renal pathologist. We then developed a multi-class deep learning (DL) framework for segmenting the different intra-arterial compartments (training dataset: 648 arteries from 24 WSIs; testing dataset: 105 arteries from 9 WSIs). Subsequently, we employed radial sampling and made measurements of media and intima thickness as a function of spatially encoded polar coordinates throughout the artery. Pathomic features were extracted from the measurements to collectively describe the arterial wall characteristics. The technique was first validated through numerical analysis of simulated arteries, with systematic deformations applied to study their effect on arterial thickness measurements. 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引用次数: 0
摘要
目的:我们的目的是开发一种计算机视觉方法,以量化肾活检数字病理图像上的动脉内厚度,作为动脉硬化的计算生物标志物:方法:从33张三色染色的肾活检全切片图像(WSIs)中对753条动脉的动脉硬化严重程度进行评分(0至3分),并由肾脏病理学家手动划定中膜、内膜和管腔的外轮廓。然后,我们开发了一个多类深度学习(DL)框架,用于分割不同的动脉内分区(训练数据集:训练数据集:来自 24 个 WSI 的 648 条动脉;测试数据集:来自 9 个 WSI 的 105 条动脉:来自 9 个 WSI 的 105 条动脉)。随后,我们采用径向采样,测量了整个动脉中作为空间编码极坐标函数的中膜和内膜厚度。从测量结果中提取病理特征,以综合描述动脉壁的特征。该技术首先通过模拟动脉的数值分析进行验证,并应用系统变形研究其对动脉厚度测量的影响。然后,我们将计算得出的测量结果与病理学家对动脉硬化的分级进行了比较:结果:数值验证表明,我们的测量技术能很好地捕捉到随着模拟动脉变形的增加,动脉内膜和介质厚度的平滑度不断降低的现象。动脉内介质、内膜和管腔的 DL 分段 Dice 分数分别为 0.84、0.78 和 0.86。通过 Kendall's tau 分析,我们的技术在动脉硬化等级和病理特征(如内膜-介质比平均值 [ τ = 0.52 , p 0.0001 ])之间发现了一些重要的关联:我们开发了一种计算机视觉方法来计算数字病理图像上的动脉内形态特征,并证明了其作为动脉硬化潜在计算生物标志物的可行性。
Characterization of arteriosclerosis based on computer-aided measurements of intra-arterial thickness.
Purpose: Our purpose is to develop a computer vision approach to quantify intra-arterial thickness on digital pathology images of kidney biopsies as a computational biomarker of arteriosclerosis.
Approach: The severity of the arteriosclerosis was scored (0 to 3) in 753 arteries from 33 trichrome-stained whole slide images (WSIs) of kidney biopsies, and the outer contours of the media, intima, and lumen were manually delineated by a renal pathologist. We then developed a multi-class deep learning (DL) framework for segmenting the different intra-arterial compartments (training dataset: 648 arteries from 24 WSIs; testing dataset: 105 arteries from 9 WSIs). Subsequently, we employed radial sampling and made measurements of media and intima thickness as a function of spatially encoded polar coordinates throughout the artery. Pathomic features were extracted from the measurements to collectively describe the arterial wall characteristics. The technique was first validated through numerical analysis of simulated arteries, with systematic deformations applied to study their effect on arterial thickness measurements. We then compared these computationally derived measurements with the pathologists' grading of arteriosclerosis.
Results: Numerical validation shows that our measurement technique adeptly captured the decreasing smoothness in the intima and media thickness as the deformation increases in the simulated arteries. Intra-arterial DL segmentations of media, intima, and lumen achieved Dice scores of 0.84, 0.78, and 0.86, respectively. Several significant associations were identified between arteriosclerosis grade and pathomic features using our technique (e.g., intima-media ratio average [ , ]) through Kendall's tau analysis.
Conclusions: We developed a computer vision approach to computationally characterize intra-arterial morphology on digital pathology images and demonstrate its feasibility as a potential computational biomarker of arteriosclerosis.
期刊介绍:
JMI covers fundamental and translational research, as well as applications, focused on medical imaging, which continue to yield physical and biomedical advancements in the early detection, diagnostics, and therapy of disease as well as in the understanding of normal. The scope of JMI includes: Imaging physics, Tomographic reconstruction algorithms (such as those in CT and MRI), Image processing and deep learning, Computer-aided diagnosis and quantitative image analysis, Visualization and modeling, Picture archiving and communications systems (PACS), Image perception and observer performance, Technology assessment, Ultrasonic imaging, Image-guided procedures, Digital pathology, Biomedical applications of biomedical imaging. JMI allows for the peer-reviewed communication and archiving of scientific developments, translational and clinical applications, reviews, and recommendations for the field.