蛙类 Holoadeninae 多样化的时间校准系统发育。

IF 2.8 Q2 MATHEMATICAL & COMPUTATIONAL BIOLOGY Frontiers in bioinformatics Pub Date : 2024-10-02 eCollection Date: 2024-01-01 DOI:10.3389/fbinf.2024.1441373
Júlio C M Chaves, Fábio Hepp, Carlos G Schrago, Beatriz Mello
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引用次数: 0

摘要

近年来,两栖动物主要品系的系统发育受到了极大关注,但科内的进化关系在很大程度上仍被忽视。Holoadeninae 亚科就是这样一个被忽视的亚科,该亚科由 9 个属 73 个种组成,地理分布不均。该亚科化石记录的缺乏阻碍了对其多样化提出一个全面的进化假说。为了填补这一空白,我们利用分子数据和来自新蝙蝠科化石记录的校准信息,推断了新蝙蝠科(Holoadeninae)的系统发生关系和分化时间。我们推断的系统发育证实了大多数属一级的联系,分子年代分析将 Holoadeninae 的起源定为始新世,随后的分裂也发生在这一时期。发生在渐新世-中新世过渡时期的气候和地质事件对该亚科的动态生物地理历史至关重要。然而,我们对分化时间估计的最高后验密度区间较宽,这主要是由于缺乏 Holoadeninae 的化石信息,其次是由于采样的核苷酸位点数量有限。
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A time-calibrated phylogeny of the diversification of Holoadeninae frogs.

The phylogeny of the major lineages of Amphibia has received significant attention in recent years, although evolutionary relationships within families remain largely neglected. One such overlooked group is the subfamily Holoadeninae, comprising 73 species across nine genera and characterized by a disjunct geographical distribution. The lack of a fossil record for this subfamily hampers the formulation of a comprehensive evolutionary hypothesis for their diversification. Aiming to fill this gap, we inferred the phylogenetic relationships and divergence times for Holoadeninae using molecular data and calibration information derived from the fossil record of Neobatrachia. Our inferred phylogeny confirmed most genus-level associations, and molecular dating analysis placed the origin of Holoadeninae in the Eocene, with subsequent splits also occurring during this period. The climatic and geological events that occurred during the Oligocene-Miocene transition were crucial to the dynamic biogeographical history of the subfamily. However, the wide highest posterior density intervals in our divergence time estimates are primarily attributed to the absence of Holoadeninae fossil information and, secondarily, to the limited number of sampled nucleotide sites.

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