利用高通量电化学对低功率细菌维持状态进行机理研究

IF 5.7 1区 化学 Q2 CHEMISTRY, PHYSICAL Journal of Chemical Theory and Computation Pub Date : 2024-10-23 DOI:10.1016/j.cell.2024.09.042
John A. Ciemniecki, Chia-Lun Ho, Richard D. Horak, Akihiro Okamoto, Dianne K. Newman
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引用次数: 0

摘要

由于缺乏可操作的实验系统,对生命代谢低限的机理研究一直很有限。在这里,我们发现铜绿假单胞菌(Pseudomonas aeruginosa)对酚嗪-1-甲酰胺(PCN)的氧化还原循环支持细胞在不生长的情况下进行维持,在 25°C 温度条件下的低质量代谢率为 8.7 × 10-4 W (g C)-1。利用高通量电化学培养装置,我们发现循环 PCN 的非生长细胞能耐受常规抗生素,但对针对膜成分的抗生素敏感。在这些条件下,细胞通过依赖醋酸激酶和 NADH 脱氢酶的非典型、促进性发酵来保存能量。在限制细胞存活的 PCN 浓度范围内,细胞特异性代谢率保持恒定,这表明细胞在接近其生物能极限的条件下运行。这种定量平台为进一步研究维持生理状态的机理打开了大门,这种生理状态是微生物在自然界和疾病中生存的基础。
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Mechanistic study of a low-power bacterial maintenance state using high-throughput electrochemistry
Mechanistic studies of life’s lower metabolic limits have been limited due to a paucity of tractable experimental systems. Here, we show that redox-cycling of phenazine-1-carboxamide (PCN) by Pseudomonas aeruginosa supports cellular maintenance in the absence of growth with a low mass-specific metabolic rate of 8.7 × 10−4 W (g C)−1 at 25°C. Leveraging a high-throughput electrochemical culturing device, we find that non-growing cells cycling PCN tolerate conventional antibiotics but are susceptible to those that target membrane components. Under these conditions, cells conserve energy via a noncanonical, facilitated fermentation that is dependent on acetate kinase and NADH dehydrogenases. Across PCN concentrations that limit cell survival, the cell-specific metabolic rate is constant, indicating the cells are operating near their bioenergetic limit. This quantitative platform opens the door to further mechanistic investigations of maintenance, a physiological state that underpins microbial survival in nature and disease.
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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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