肌球蛋白头部的相互作用动力学及其通过 2'-deoxy-ADP 的修饰。

IF 3.2 3区 生物学 Q2 BIOPHYSICS Biophysical journal Pub Date : 2024-10-22 DOI:10.1016/j.bpj.2024.10.013
Matthew Carter Childers,Michael A Geeves,Michael Regnier
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引用次数: 0

摘要

横纹肌的收缩是由嵌入肌节粗丝中的循环肌球蛋白驱动的。除了与肌动蛋白进行交桥循环外,这些肌球蛋白还能进入一种非活动的封闭状态,在这种状态下,球状的 S1 头沿粗丝表面静止,并被抑制进行运动活动。从结构上讲,这种状态被称为 "相互作用头"(interactive heads motif,IHM),是肌球蛋白的一种关键构象状态,可调节肌肉收缩能力和能量消耗。螯合状态的结构扰动会从病理学角度破坏 IHM 结构和肌肉组织的机械性能。因此,IHM 状态已成为治疗干预的目标。一种名为 2'-deoxy-ATP (dATP) 的 ATP 类似物是一种能破坏 IHM 稳定的强效肌球蛋白激活剂。在这里,我们利用分子动力学模拟来研究 dATP 改变肌球蛋白在封闭状态下的结构和动力学的分子机制。对两个核苷酸结合口袋中都含有 ADP.Pi 的 IHM 状态进行的模拟揭示了肌球蛋白在这种 "非活性 "状态下封存头-自由头界面、轻链结合域和 S2 的动态运动。用 dADP.Pi 替代 ADP.Pi 引发了一系列结构变化,增加了阻塞头部-自由头部界面残基接触对之间的异质性,并使界面上的相互作用能降低了 14%。该界面的动态变化伴随着轻链结合区的动态变化。对这些动态的比较分析预测了可能影响 IHM 稳定性的新结构位点。
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Interacting myosin head dynamics and their modification by 2'-deoxy-ADP.
The contraction of striated muscle is driven by cycling myosin motor proteins embedded within the thick filaments of sarcomeres. In addition to cross-bridge cycling with actin, these myosin proteins can enter an inactive, sequestered state in which the globular S1 heads rest along the thick filament surface and are inhibited from performing motor activities. Structurally, this state is called the interacting heads motif (IHM) and is a critical conformational state of myosin that regulates muscle contractility and energy expenditure. Structural perturbation of the sequestered state can pathologically disrupt IHM structure and the mechanical performance of muscle tissue. Thus, the IHM state has become a target for therapeutic intervention. An ATP analogue called 2'-deoxy-ATP (dATP) is a potent myosin activator that destabilizes the IHM. Here, we use molecular dynamics simulations to study the molecular mechanisms by which dATP modifies the structure and dynamics of myosin in a sequestered state. Simulations of the IHM state containing ADP.Pi in both nucleotide binding pockets revealed dynamic motions of the blocked head - free head interface, light chain binding domain, and S2 in this 'inactive' state of myosin. Replacement of ADP.Pi by dADP.Pi triggered a series of structural changes that increased heterogeneity among residue contact pairs at the blocked head - free head interface and a 14% decrease in the interaction energy at the interface. Dynamic changes to this interface were accompanied by dynamics in the light chain binding region. A comparative analysis of these dynamics predicted new structural sites that may affect IHM stability.
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来源期刊
Biophysical journal
Biophysical journal 生物-生物物理
CiteScore
6.10
自引率
5.90%
发文量
3090
审稿时长
2 months
期刊介绍: BJ publishes original articles, letters, and perspectives on important problems in modern biophysics. The papers should be written so as to be of interest to a broad community of biophysicists. BJ welcomes experimental studies that employ quantitative physical approaches for the study of biological systems, including or spanning scales from molecule to whole organism. Experimental studies of a purely descriptive or phenomenological nature, with no theoretical or mechanistic underpinning, are not appropriate for publication in BJ. Theoretical studies should offer new insights into the understanding ofexperimental results or suggest new experimentally testable hypotheses. Articles reporting significant methodological or technological advances, which have potential to open new areas of biophysical investigation, are also suitable for publication in BJ. Papers describing improvements in accuracy or speed of existing methods or extra detail within methods described previously are not suitable for BJ.
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