{"title":"利用改进的 SegNet 和深度堆叠集合模型进行肝癌计算机辅助诊断。","authors":"Vinnakota Sai Durga Tejaswi, Venubabu Rachapudi","doi":"10.1016/j.compbiolchem.2024.108243","DOIUrl":null,"url":null,"abstract":"<div><div>Liver cancer is a leading cause of cancer-related deaths, often diagnosed at advanced stages due to reliance on traditional imaging methods. Existing computer-aided diagnosis systems struggle with noise, anatomical complexity, and ineffective feature integration, leading to inaccuracies in lesion segmentation and classification. By effectively addressing these challenges, the model aims to enhance early detection and assist clinicians in making informed decisions. Ultimately, this research seeks to contribute to more efficient and accurate liver cancer diagnosis. This paper presents a novel model for liver cancer classification, called SegNet-based Liver Cancer Classification via SqueezeNet (SgN-LCC-SqN). The model effectively executes liver cancer segmentation and classification through four key steps: preprocessing, segmentation, feature extraction, and classification. During preprocessing, Quadratic Mean Estimated Wiener Filtering (QMEWF) is utilized to minimize image noise. Segmentation divides the image into segments using Enhanced Feature Pyramid SegNet (EFP-SgN), which is essential for precise diagnosis. Feature extraction encompasses color features, Local Directional Pattern Variance, and Correlation Filtering-Local Gradient Increasing Pattern (CF-LGIP) features. The extracted features are then processed through an ensemble model, Deep Convolutional, Recurrent, Long Short Term Memory with SqueezeNet (DCR-LSTM-SqN), which includes Deep Convolutional Neural Network (DCNN), Recurrent Neural Network (RNN), Long Short-Term Memory (LSTM), and Modified Loss Function in SqueezeNet (MLF-SqN) classifiers, sequentially analyzing the feature sets through DCNN, RNN, and LSTM before classification by MLF-SqN. The performance of the suggested DCR-LSTM-SqN model is evaluated over conventional methods for positive, negative and other metrics. The DCR-LSTM-SqN model consistently demonstrates superior accuracy, ranging from 0.947 to 0.984, across all training data percentages. Thus, the proposed model effectively segments liver lesions and classifies cancerous areas, demonstrating its potential as a valuable resource for clinicians to enhance the efficiency and accuracy of liver cancer diagnosis.</div></div>","PeriodicalId":10616,"journal":{"name":"Computational Biology and Chemistry","volume":"113 ","pages":"Article 108243"},"PeriodicalIF":2.6000,"publicationDate":"2024-10-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Computer-aided diagnosis of liver cancer with improved SegNet and deep stacking ensemble model\",\"authors\":\"Vinnakota Sai Durga Tejaswi, Venubabu Rachapudi\",\"doi\":\"10.1016/j.compbiolchem.2024.108243\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Liver cancer is a leading cause of cancer-related deaths, often diagnosed at advanced stages due to reliance on traditional imaging methods. Existing computer-aided diagnosis systems struggle with noise, anatomical complexity, and ineffective feature integration, leading to inaccuracies in lesion segmentation and classification. By effectively addressing these challenges, the model aims to enhance early detection and assist clinicians in making informed decisions. Ultimately, this research seeks to contribute to more efficient and accurate liver cancer diagnosis. This paper presents a novel model for liver cancer classification, called SegNet-based Liver Cancer Classification via SqueezeNet (SgN-LCC-SqN). The model effectively executes liver cancer segmentation and classification through four key steps: preprocessing, segmentation, feature extraction, and classification. During preprocessing, Quadratic Mean Estimated Wiener Filtering (QMEWF) is utilized to minimize image noise. Segmentation divides the image into segments using Enhanced Feature Pyramid SegNet (EFP-SgN), which is essential for precise diagnosis. Feature extraction encompasses color features, Local Directional Pattern Variance, and Correlation Filtering-Local Gradient Increasing Pattern (CF-LGIP) features. The extracted features are then processed through an ensemble model, Deep Convolutional, Recurrent, Long Short Term Memory with SqueezeNet (DCR-LSTM-SqN), which includes Deep Convolutional Neural Network (DCNN), Recurrent Neural Network (RNN), Long Short-Term Memory (LSTM), and Modified Loss Function in SqueezeNet (MLF-SqN) classifiers, sequentially analyzing the feature sets through DCNN, RNN, and LSTM before classification by MLF-SqN. The performance of the suggested DCR-LSTM-SqN model is evaluated over conventional methods for positive, negative and other metrics. The DCR-LSTM-SqN model consistently demonstrates superior accuracy, ranging from 0.947 to 0.984, across all training data percentages. Thus, the proposed model effectively segments liver lesions and classifies cancerous areas, demonstrating its potential as a valuable resource for clinicians to enhance the efficiency and accuracy of liver cancer diagnosis.</div></div>\",\"PeriodicalId\":10616,\"journal\":{\"name\":\"Computational Biology and Chemistry\",\"volume\":\"113 \",\"pages\":\"Article 108243\"},\"PeriodicalIF\":2.6000,\"publicationDate\":\"2024-10-19\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computational Biology and Chemistry\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1476927124002317\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computational Biology and Chemistry","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1476927124002317","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOLOGY","Score":null,"Total":0}
Computer-aided diagnosis of liver cancer with improved SegNet and deep stacking ensemble model
Liver cancer is a leading cause of cancer-related deaths, often diagnosed at advanced stages due to reliance on traditional imaging methods. Existing computer-aided diagnosis systems struggle with noise, anatomical complexity, and ineffective feature integration, leading to inaccuracies in lesion segmentation and classification. By effectively addressing these challenges, the model aims to enhance early detection and assist clinicians in making informed decisions. Ultimately, this research seeks to contribute to more efficient and accurate liver cancer diagnosis. This paper presents a novel model for liver cancer classification, called SegNet-based Liver Cancer Classification via SqueezeNet (SgN-LCC-SqN). The model effectively executes liver cancer segmentation and classification through four key steps: preprocessing, segmentation, feature extraction, and classification. During preprocessing, Quadratic Mean Estimated Wiener Filtering (QMEWF) is utilized to minimize image noise. Segmentation divides the image into segments using Enhanced Feature Pyramid SegNet (EFP-SgN), which is essential for precise diagnosis. Feature extraction encompasses color features, Local Directional Pattern Variance, and Correlation Filtering-Local Gradient Increasing Pattern (CF-LGIP) features. The extracted features are then processed through an ensemble model, Deep Convolutional, Recurrent, Long Short Term Memory with SqueezeNet (DCR-LSTM-SqN), which includes Deep Convolutional Neural Network (DCNN), Recurrent Neural Network (RNN), Long Short-Term Memory (LSTM), and Modified Loss Function in SqueezeNet (MLF-SqN) classifiers, sequentially analyzing the feature sets through DCNN, RNN, and LSTM before classification by MLF-SqN. The performance of the suggested DCR-LSTM-SqN model is evaluated over conventional methods for positive, negative and other metrics. The DCR-LSTM-SqN model consistently demonstrates superior accuracy, ranging from 0.947 to 0.984, across all training data percentages. Thus, the proposed model effectively segments liver lesions and classifies cancerous areas, demonstrating its potential as a valuable resource for clinicians to enhance the efficiency and accuracy of liver cancer diagnosis.
期刊介绍:
Computational Biology and Chemistry publishes original research papers and review articles in all areas of computational life sciences. High quality research contributions with a major computational component in the areas of nucleic acid and protein sequence research, molecular evolution, molecular genetics (functional genomics and proteomics), theory and practice of either biology-specific or chemical-biology-specific modeling, and structural biology of nucleic acids and proteins are particularly welcome. Exceptionally high quality research work in bioinformatics, systems biology, ecology, computational pharmacology, metabolism, biomedical engineering, epidemiology, and statistical genetics will also be considered.
Given their inherent uncertainty, protein modeling and molecular docking studies should be thoroughly validated. In the absence of experimental results for validation, the use of molecular dynamics simulations along with detailed free energy calculations, for example, should be used as complementary techniques to support the major conclusions. Submissions of premature modeling exercises without additional biological insights will not be considered.
Review articles will generally be commissioned by the editors and should not be submitted to the journal without explicit invitation. However prospective authors are welcome to send a brief (one to three pages) synopsis, which will be evaluated by the editors.