{"title":"[Jasminum sambac var. Fuzhou bifoliatum 的萜烯合成酶基因家族:全基因组分析及对茉莉酸甲酯反应的表达模式】。]","authors":"Shaoqing Lin, Linwei Zhou, Liqing Feng, Cairong Zhong, Yu Zeng, Yusen Liao, Jingping Fang","doi":"10.13345/j.cjb.240069","DOIUrl":null,"url":null,"abstract":"<p><p>Terpene synthases (TPSs) play a crucial role in the synthesis of terpenoids that contribute to the scent profiles of flowers. However, few studies report the genome-wide analysis of <i>TPS</i>s gene in <i>Jasminum sambac</i> var. <i>Fuzhou bifoliatum</i> and their expression pattern in response to methyl jasmonate (MeJA). In this study, we employed bioinformatics tools for genome-wide analysis of the <i>J</i>. <i>sambac</i> TPS (DJTPS) gene family and determined the physical and chemical properties, subcellular location, protein-protein interactions, phylogenetic relationship, subfamily classification, chromosomal location and collinearity, gene structure, conserved motifs, and promoter <i>cis</i>-acting elements. The expression patterns of <i>DJTPS</i>s in different tissues and in response to MeJA treatment were analyzed based on the transcriptome data combined with quantitative real-time PCR (qRT-PCR). We identified 32 intact <i>DJTPS</i> genes in the genome of <i>J</i>. <i>sambac</i>, which presented uneven distribution across nine chromosomes. All the deduced proteins were hydrophilic, predominantly localized in the cytoplasm. The phylogenetic analysis classified the <i>DJTPS</i> genes into five subfamilies: TPS-a, TPS-b, TPS-c, TPS-e/f, and TPS-g. The results of the collinearity analysis showed a total of 10 sets of replication events in <i>DJTPS</i>s, most of which underwent purifying selection. A comparative analysis of <i>TPS</i> homologous gene pairs was performed among <i>J</i>. <i>sambac</i> var. <i>Fuzhou bifoliatum</i> and other six species, which revealed different number of homologous gene pairs. The number of exons and motifs was conserved within the same subfamily. <i>DJTPS</i> genes carried multiple elements that may be involved in the response to MeJA. In addition, the transcriptome and qRT-PCR data unveiled that several <i>TPS</i> genes exhibited tissue-specific expression patterns, and the genes with specific expression in flowers were the most. Upon exposure to MeJA, 14 <i>TPS</i> genes showcased upregulated expression 5 h or 6 h post-treatment, and <i>DJTPS03</i>, <i>DJTPS04</i> and <i>DJTPS21</i> showed significantly increased expression levels after MeJA treatment. This study provides preliminary evidence that MeJA possesses the ability to enhance the expression of <i>DJTPS</i> genes during the critical flowering stage, which will facilitate the synthesis of terpenoids and improve the quality of floral fragrance.</p>","PeriodicalId":21778,"journal":{"name":"Sheng wu gong cheng xue bao = Chinese journal of biotechnology","volume":"40 10","pages":"3561-3587"},"PeriodicalIF":0.0000,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"[Terpene synthase gene family in <i>Jasminum sambac</i> var. <i>Fuzhou bifoliatum</i>: genome-wide analysis and expression pattern in response to methyl jasmonate].\",\"authors\":\"Shaoqing Lin, Linwei Zhou, Liqing Feng, Cairong Zhong, Yu Zeng, Yusen Liao, Jingping Fang\",\"doi\":\"10.13345/j.cjb.240069\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Terpene synthases (TPSs) play a crucial role in the synthesis of terpenoids that contribute to the scent profiles of flowers. However, few studies report the genome-wide analysis of <i>TPS</i>s gene in <i>Jasminum sambac</i> var. <i>Fuzhou bifoliatum</i> and their expression pattern in response to methyl jasmonate (MeJA). In this study, we employed bioinformatics tools for genome-wide analysis of the <i>J</i>. <i>sambac</i> TPS (DJTPS) gene family and determined the physical and chemical properties, subcellular location, protein-protein interactions, phylogenetic relationship, subfamily classification, chromosomal location and collinearity, gene structure, conserved motifs, and promoter <i>cis</i>-acting elements. The expression patterns of <i>DJTPS</i>s in different tissues and in response to MeJA treatment were analyzed based on the transcriptome data combined with quantitative real-time PCR (qRT-PCR). We identified 32 intact <i>DJTPS</i> genes in the genome of <i>J</i>. <i>sambac</i>, which presented uneven distribution across nine chromosomes. All the deduced proteins were hydrophilic, predominantly localized in the cytoplasm. The phylogenetic analysis classified the <i>DJTPS</i> genes into five subfamilies: TPS-a, TPS-b, TPS-c, TPS-e/f, and TPS-g. The results of the collinearity analysis showed a total of 10 sets of replication events in <i>DJTPS</i>s, most of which underwent purifying selection. A comparative analysis of <i>TPS</i> homologous gene pairs was performed among <i>J</i>. <i>sambac</i> var. <i>Fuzhou bifoliatum</i> and other six species, which revealed different number of homologous gene pairs. The number of exons and motifs was conserved within the same subfamily. <i>DJTPS</i> genes carried multiple elements that may be involved in the response to MeJA. In addition, the transcriptome and qRT-PCR data unveiled that several <i>TPS</i> genes exhibited tissue-specific expression patterns, and the genes with specific expression in flowers were the most. Upon exposure to MeJA, 14 <i>TPS</i> genes showcased upregulated expression 5 h or 6 h post-treatment, and <i>DJTPS03</i>, <i>DJTPS04</i> and <i>DJTPS21</i> showed significantly increased expression levels after MeJA treatment. This study provides preliminary evidence that MeJA possesses the ability to enhance the expression of <i>DJTPS</i> genes during the critical flowering stage, which will facilitate the synthesis of terpenoids and improve the quality of floral fragrance.</p>\",\"PeriodicalId\":21778,\"journal\":{\"name\":\"Sheng wu gong cheng xue bao = Chinese journal of biotechnology\",\"volume\":\"40 10\",\"pages\":\"3561-3587\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-10-25\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Sheng wu gong cheng xue bao = Chinese journal of biotechnology\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.13345/j.cjb.240069\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"Biochemistry, Genetics and Molecular Biology\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Sheng wu gong cheng xue bao = Chinese journal of biotechnology","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.13345/j.cjb.240069","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"Biochemistry, Genetics and Molecular Biology","Score":null,"Total":0}
引用次数: 0
摘要
萜烯合成酶(TPSs)在萜类化合物的合成过程中起着至关重要的作用,而萜类化合物对花朵的香味特征做出了贡献。然而,很少有研究报道福州双叉茉莉花中 TPSs 基因的全基因组分析及其对茉莉酸甲酯(MeJA)的表达模式。本研究利用生物信息学工具对福州茉莉花 TPS(DJTPS)基因家族进行了全基因组分析,确定了其理化性质、亚细胞位置、蛋白-蛋白相互作用、系统发育关系、亚家族分类、染色体位置和共线性、基因结构、保守基序和启动子顺式作用元件。根据转录组数据并结合定量实时 PCR(qRT-PCR)分析了 DJTPS 在不同组织中的表达模式以及对 MeJA 处理的反应。我们在 J. sambac 的基因组中发现了 32 个完整的 DJTPS 基因,这些基因在 9 条染色体上分布不均。所有推导出的蛋白质都是亲水性的,主要定位于细胞质中。系统进化分析将 DJTPS 基因分为五个亚家族:TPS-a、TPS-b、TPS-c、TPS-e/f 和 TPS-g。共线性分析结果显示,DJTPSs中共有10组复制事件,其中大部分都经历了纯化选择。对福州双孢桉变种和其他六个物种的TPS同源基因对进行了比较分析,发现同源基因对的数量不同。在同一亚家族中,外显子的数量和基序是一致的。DJTPS基因携带的多个元件可能参与了对MeJA的反应。此外,转录组和 qRT-PCR 数据揭示了多个 TPS 基因具有组织特异性表达模式,其中在花中特异性表达的基因最多。暴露于 MeJA 后,14 个 TPS 基因在处理后 5 h 或 6 h 表达上调,其中 DJTPS03、DJTPS04 和 DJTPS21 在 MeJA 处理后表达水平显著增加。该研究初步证明,MeJA 能在关键的开花期提高 DJTPS 基因的表达,从而促进萜类化合物的合成,提高花香的品质。
[Terpene synthase gene family in Jasminum sambac var. Fuzhou bifoliatum: genome-wide analysis and expression pattern in response to methyl jasmonate].
Terpene synthases (TPSs) play a crucial role in the synthesis of terpenoids that contribute to the scent profiles of flowers. However, few studies report the genome-wide analysis of TPSs gene in Jasminum sambac var. Fuzhou bifoliatum and their expression pattern in response to methyl jasmonate (MeJA). In this study, we employed bioinformatics tools for genome-wide analysis of the J. sambac TPS (DJTPS) gene family and determined the physical and chemical properties, subcellular location, protein-protein interactions, phylogenetic relationship, subfamily classification, chromosomal location and collinearity, gene structure, conserved motifs, and promoter cis-acting elements. The expression patterns of DJTPSs in different tissues and in response to MeJA treatment were analyzed based on the transcriptome data combined with quantitative real-time PCR (qRT-PCR). We identified 32 intact DJTPS genes in the genome of J. sambac, which presented uneven distribution across nine chromosomes. All the deduced proteins were hydrophilic, predominantly localized in the cytoplasm. The phylogenetic analysis classified the DJTPS genes into five subfamilies: TPS-a, TPS-b, TPS-c, TPS-e/f, and TPS-g. The results of the collinearity analysis showed a total of 10 sets of replication events in DJTPSs, most of which underwent purifying selection. A comparative analysis of TPS homologous gene pairs was performed among J. sambac var. Fuzhou bifoliatum and other six species, which revealed different number of homologous gene pairs. The number of exons and motifs was conserved within the same subfamily. DJTPS genes carried multiple elements that may be involved in the response to MeJA. In addition, the transcriptome and qRT-PCR data unveiled that several TPS genes exhibited tissue-specific expression patterns, and the genes with specific expression in flowers were the most. Upon exposure to MeJA, 14 TPS genes showcased upregulated expression 5 h or 6 h post-treatment, and DJTPS03, DJTPS04 and DJTPS21 showed significantly increased expression levels after MeJA treatment. This study provides preliminary evidence that MeJA possesses the ability to enhance the expression of DJTPS genes during the critical flowering stage, which will facilitate the synthesis of terpenoids and improve the quality of floral fragrance.
期刊介绍:
Chinese Journal of Biotechnology (Chinese edition) , sponsored by the Institute of Microbiology, Chinese Academy of Sciences and the Chinese Society for Microbiology, is a peer-reviewed international journal. The journal is cited by many scientific databases , such as Chemical Abstract (CA), Biology Abstract (BA), MEDLINE, Russian Digest , Chinese Scientific Citation Index (CSCI), Chinese Journal Citation Report (CJCR), and Chinese Academic Journal (CD version). The Journal publishes new discoveries, techniques and developments in genetic engineering, cell engineering, enzyme engineering, biochemical engineering, tissue engineering, bioinformatics, biochips and other fields of biotechnology.