通过 MA'AT 分析揭示语境对人奶低聚糖连接构象和动态的影响

IF 2.9 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Biochemistry Biochemistry Pub Date : 2024-10-22 DOI:10.1021/acs.biochem.4c0034810.1021/acs.biochem.4c00348
Wenhui Zhang, Reagan J. Meredith, Mi-Kyung Yoon, Ian Carmichael and Anthony S. Serianni*, 
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引用次数: 0

摘要

一种新兴的核磁共振方法--MA'AT 分析法,已被用于研究语境对几种人乳低聚糖(HMO)构象特性的影响。将甲基 β-乳糖苷(MeL)二糖中 β-(1→4)连接的 MA'AT 模型与 HMO 三糖中相同连接的 MA'AT 模型进行了比较、甲基 2′-岩藻酰半乳糖苷(Me2′FL)和甲基 3-岩藻酰半乳糖苷(Me3FL),以及四糖甲基 2′,3-二岩藻酰半乳糖苷(Me2′,3DFL)中相同连接的结果进行了比较。MA'AT分析表明,这些连接中的psi(ψ)扭转角的平均值和圆标准偏差(CSD)有明显的上下文效应。在MeL的O2′Gal和O3Glc上进行α-岩藻糖基化,得到Me2′,3DFL,这大大限制了关于ψ的自由运动(CSD减少了70%),并使其平均值偏移了18°。与α-岩藻糖基化作用在O2Gal上得到Me2′FL相比,α-岩藻糖基化作用在MeL的O3Glc上得到Me3FL对ψ的限制更大。这些效应可以用 Me3FL 的预期溶液构象来解释,它与 Lewisx 三糖非常相似。将ψ的 MA'AT 模型与通过 1 μs 水分子动力学模拟(GLYCAM06)获得的模型进行比较,发现了相同的趋势,即 MA'AT 分析能够再现溶液中的分子行为,而这些行为迄今只能通过 MD 模拟获得。这些结果突显了 MA'AT 分析在确定溶液中分子扭转角的概率分布以及这些扭转角的排列平均程度方面的能力。
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Context Effects on Human Milk Oligosaccharide Linkage Conformation and Dynamics Revealed by MA’AT Analysis

An emerging NMR method, MA’AT analysis, has been applied to investigate context effects on the conformational properties of several human milk oligosaccharides (HMOs). The MA’AT model of the β-(1→4) linkage in the disaccharide, methyl β-lactoside (MeL), was compared to those obtained for the same linkage in the HMO trisaccharides, methyl 2′-fucosyllactoside (Me2′FL) and methyl 3-fucosyllactoside (Me3FL), and in the tetrasaccharide, methyl 2′,3-difucosyllactoside (Me2′,3DFL). MA’AT analysis revealed significant context effects on the mean values and circular standard deviations (CSDs) of the psi (ψ) torsion angles in these linkages. α-Fucosylation at both O2′Gal and O3Glc of MeL to give Me2′,3DFL significantly constrained librational motion about ψ (70% reduction in the CSD) and shifted its mean value by ∼18°. α-Fucosylation at the O3Glc of MeL to give Me3FL constrained ψ more than α-fucosylation at the O2Gal to give Me2′FL. These effects can be explained by the expected solution conformation of Me3FL, which closely resembles the Lewisx trisaccharide. Comparisons of MA’AT models of ψ to those obtained by 1 μs aqueous molecular dynamics simulation (GLYCAM06) revealed identical trends, that is, MA’AT analysis was able to recapitulate molecular behavior in solution that was heretofore only available from MD simulation. The results highlight the capabilities of MA’AT analysis to determine probability distributions of molecular torsion angles in solution as well as degrees of librational averaging of these angles.

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来源期刊
Biochemistry Biochemistry
Biochemistry Biochemistry 生物-生化与分子生物学
CiteScore
5.50
自引率
3.40%
发文量
336
审稿时长
1-2 weeks
期刊介绍: Biochemistry provides an international forum for publishing exceptional, rigorous, high-impact research across all of biological chemistry. This broad scope includes studies on the chemical, physical, mechanistic, and/or structural basis of biological or cell function, and encompasses the fields of chemical biology, synthetic biology, disease biology, cell biology, nucleic acid biology, neuroscience, structural biology, and biophysics. In addition to traditional Research Articles, Biochemistry also publishes Communications, Viewpoints, and Perspectives, as well as From the Bench articles that report new methods of particular interest to the biological chemistry community.
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