分子动力学模拟中混合的显式构型熵。

IF 4.8 2区 化学 Q2 CHEMISTRY, PHYSICAL The Journal of Physical Chemistry Letters Pub Date : 2024-11-14 Epub Date: 2024-11-05 DOI:10.1021/acs.jpclett.4c02819
T Hanke, A L Upterworth, D Sebastiani
{"title":"分子动力学模拟中混合的显式构型熵。","authors":"T Hanke, A L Upterworth, D Sebastiani","doi":"10.1021/acs.jpclett.4c02819","DOIUrl":null,"url":null,"abstract":"<p><p>The entropy of mixing of a multicomponent system of particles is a simple expression of the molar fractions for the equilibrium state, but its intermediate values for transient (nonequilibrium) states can not be calculated directly from the particle coordinates so far. We propose a simple expression for the configurational entropy of mixing based solely on the set of instantaneous coordinates, which is suitable for the on-the-fly determination of the degree of mixing along a molecular dynamics trajectory. We illustrate the applicability of our scheme with the example of several molecular mixtures that exhibit fast and slow mixing and demixing processes within a molecular dynamics simulation.</p>","PeriodicalId":62,"journal":{"name":"The Journal of Physical Chemistry Letters","volume":null,"pages":null},"PeriodicalIF":4.8000,"publicationDate":"2024-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Explicit Configurational Entropy of Mixing in Molecular Dynamics Simulations.\",\"authors\":\"T Hanke, A L Upterworth, D Sebastiani\",\"doi\":\"10.1021/acs.jpclett.4c02819\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>The entropy of mixing of a multicomponent system of particles is a simple expression of the molar fractions for the equilibrium state, but its intermediate values for transient (nonequilibrium) states can not be calculated directly from the particle coordinates so far. We propose a simple expression for the configurational entropy of mixing based solely on the set of instantaneous coordinates, which is suitable for the on-the-fly determination of the degree of mixing along a molecular dynamics trajectory. We illustrate the applicability of our scheme with the example of several molecular mixtures that exhibit fast and slow mixing and demixing processes within a molecular dynamics simulation.</p>\",\"PeriodicalId\":62,\"journal\":{\"name\":\"The Journal of Physical Chemistry Letters\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":4.8000,\"publicationDate\":\"2024-11-14\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"The Journal of Physical Chemistry Letters\",\"FirstCategoryId\":\"1\",\"ListUrlMain\":\"https://doi.org/10.1021/acs.jpclett.4c02819\",\"RegionNum\":2,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/11/5 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"The Journal of Physical Chemistry Letters","FirstCategoryId":"1","ListUrlMain":"https://doi.org/10.1021/acs.jpclett.4c02819","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/11/5 0:00:00","PubModel":"Epub","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0

摘要

多组分粒子系统的混合熵是平衡态摩尔分数的简单表达式,但其瞬态(非平衡态)的中间值至今无法直接从粒子坐标中计算出来。我们提出了一种仅基于瞬时坐标集的简单混合构型熵表达式,适用于沿分子动力学轨迹即时确定混合程度。我们以分子动力学模拟中表现出快速和慢速混合和脱混合过程的几种分子混合物为例,说明了我们方案的适用性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

摘要图片

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Explicit Configurational Entropy of Mixing in Molecular Dynamics Simulations.

The entropy of mixing of a multicomponent system of particles is a simple expression of the molar fractions for the equilibrium state, but its intermediate values for transient (nonequilibrium) states can not be calculated directly from the particle coordinates so far. We propose a simple expression for the configurational entropy of mixing based solely on the set of instantaneous coordinates, which is suitable for the on-the-fly determination of the degree of mixing along a molecular dynamics trajectory. We illustrate the applicability of our scheme with the example of several molecular mixtures that exhibit fast and slow mixing and demixing processes within a molecular dynamics simulation.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
The Journal of Physical Chemistry Letters
The Journal of Physical Chemistry Letters CHEMISTRY, PHYSICAL-NANOSCIENCE & NANOTECHNOLOGY
CiteScore
9.60
自引率
7.00%
发文量
1519
审稿时长
1.6 months
期刊介绍: The Journal of Physical Chemistry (JPC) Letters is devoted to reporting new and original experimental and theoretical basic research of interest to physical chemists, biophysical chemists, chemical physicists, physicists, material scientists, and engineers. An important criterion for acceptance is that the paper reports a significant scientific advance and/or physical insight such that rapid publication is essential. Two issues of JPC Letters are published each month.
期刊最新文献
Signature of Proton–Hole Transfer in Hydrogen-Bonded Solids at 10 K Cu-Supported ZnO under Conditions of CO2 Reduction to Methanol: Why 0.2 ML Coverage? Ferroelectric, Switchable Dielectric and Nonlinear Optical Properties in Inorganic-Organic Lead-Free 1D Hybrids Based on Bi(III) and Azetidine: (C3NH8)2[BiCl5], (C3NH8)2[BiBr5]. Predicting Long-Term Stability from Short-Term Measurement: Insights from Modeling Degradation in Perovskite Solar Cells during Voltage Scans and Impedance Spectroscopy. Revealing Dynamics and Competitive Mechanism of Gas-Induced Surface Segregation of PdFe0.08 Dilute Alloy by Multi-Dimensional Imaging.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1