Tao Li, Nore Stolte, Renbiao Tao, Dimitri A. Sverjensky, Isabelle Daniel and Ding Pan*,
{"title":"地球上地幔条件下 C-H-O-N 流体中生物分子的合成与稳定性","authors":"Tao Li, Nore Stolte, Renbiao Tao, Dimitri A. Sverjensky, Isabelle Daniel and Ding Pan*, ","doi":"10.1021/jacs.4c1168010.1021/jacs.4c11680","DOIUrl":null,"url":null,"abstract":"<p >How life started on Earth is an unsolved mystery. There are various hypotheses for the location ranging from outer space to the seafloor, subseafloor, or potentially deeper. Here, we applied extensive ab initio molecular dynamics simulations to study chemical reactions between NH<sub>3</sub>, H<sub>2</sub>O, H<sub>2</sub>, and CO at pressures (<i>P</i>) and temperatures (<i>T</i>) approximating the conditions of Earth’s upper mantle (i.e., 10–13 GPa, 1000–1400 K). Contrary to the previous assumptions that large organic molecules might readily disintegrate in aqueous solutions at extreme <i>P</i>–<i>T</i> conditions, we found that many organic compounds formed without any catalysts and persisted in C–H–O–N fluids under these extreme conditions, including glycine, ribose, urea, and uracil-like molecules. Particularly, our free-energy calculations showed that the C–N bond is thermodynamically stable at 10 GPa and 1400 K. Moreover, while the pyranose (six-membered ring) form of ribose is more stable than the furanose (five-membered ring) form at ambient conditions, we found that the formation of the five-membered-ring form of ribose is thermodynamically more favored at extreme conditions, which is consistent with the exclusive incorporation of β-<span>d</span>-ribofuranose in RNA. We have uncovered a previously unexplored pathway through which the crucial biomolecules could be abiotically synthesized from geofluids in the deep interior of Earth and other planets, and these formed biomolecules could potentially contribute to the early stage of the emergence of life.</p>","PeriodicalId":49,"journal":{"name":"Journal of the American Chemical Society","volume":"146 45","pages":"31240–31250 31240–31250"},"PeriodicalIF":14.4000,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Synthesis and Stability of Biomolecules in C–H–O–N Fluids under Earth’s Upper Mantle Conditions\",\"authors\":\"Tao Li, Nore Stolte, Renbiao Tao, Dimitri A. Sverjensky, Isabelle Daniel and Ding Pan*, \",\"doi\":\"10.1021/jacs.4c1168010.1021/jacs.4c11680\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p >How life started on Earth is an unsolved mystery. There are various hypotheses for the location ranging from outer space to the seafloor, subseafloor, or potentially deeper. Here, we applied extensive ab initio molecular dynamics simulations to study chemical reactions between NH<sub>3</sub>, H<sub>2</sub>O, H<sub>2</sub>, and CO at pressures (<i>P</i>) and temperatures (<i>T</i>) approximating the conditions of Earth’s upper mantle (i.e., 10–13 GPa, 1000–1400 K). Contrary to the previous assumptions that large organic molecules might readily disintegrate in aqueous solutions at extreme <i>P</i>–<i>T</i> conditions, we found that many organic compounds formed without any catalysts and persisted in C–H–O–N fluids under these extreme conditions, including glycine, ribose, urea, and uracil-like molecules. Particularly, our free-energy calculations showed that the C–N bond is thermodynamically stable at 10 GPa and 1400 K. Moreover, while the pyranose (six-membered ring) form of ribose is more stable than the furanose (five-membered ring) form at ambient conditions, we found that the formation of the five-membered-ring form of ribose is thermodynamically more favored at extreme conditions, which is consistent with the exclusive incorporation of β-<span>d</span>-ribofuranose in RNA. We have uncovered a previously unexplored pathway through which the crucial biomolecules could be abiotically synthesized from geofluids in the deep interior of Earth and other planets, and these formed biomolecules could potentially contribute to the early stage of the emergence of life.</p>\",\"PeriodicalId\":49,\"journal\":{\"name\":\"Journal of the American Chemical Society\",\"volume\":\"146 45\",\"pages\":\"31240–31250 31240–31250\"},\"PeriodicalIF\":14.4000,\"publicationDate\":\"2024-11-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of the American Chemical Society\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://pubs.acs.org/doi/10.1021/jacs.4c11680\",\"RegionNum\":1,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of the American Chemical Society","FirstCategoryId":"92","ListUrlMain":"https://pubs.acs.org/doi/10.1021/jacs.4c11680","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0
摘要
生命如何在地球上起源是一个未解之谜。关于生命起源的地点有多种假设,从外太空到海底、海底下层,甚至可能更深。在这里,我们应用了大量 ab initio 分子动力学模拟来研究 NH3、H2O、H2 和 CO 在接近地球上地幔条件(即 10-13 GPa、1000-1400 K)的压力(P)和温度(T)下的化学反应。与以往认为在极端的 P-T 条件下,大分子有机物可能很容易在水溶液中分解的假设相反,我们发现在这些极端条件下,许多有机化合物在没有任何催化剂的情况下形成,并在 C-H-O-N 流体中持续存在,其中包括甘氨酸、核糖、尿素和类尿嘧啶分子。此外,虽然在环境条件下吡喃糖(六元环)形式的核糖比呋喃糖(五元环)形式的核糖更稳定,但我们发现,在极端条件下,热力学上更倾向于形成五元环形式的核糖,这与β-d-呋喃核糖在 RNA 中的独家结合是一致的。我们发现了一种以前未曾探索过的途径,通过这种途径可以从地球和其他行星内部深处的地质流体中非生物合成关键的生物大分子,这些形成的生物大分子有可能为生命出现的早期阶段做出贡献。
Synthesis and Stability of Biomolecules in C–H–O–N Fluids under Earth’s Upper Mantle Conditions
How life started on Earth is an unsolved mystery. There are various hypotheses for the location ranging from outer space to the seafloor, subseafloor, or potentially deeper. Here, we applied extensive ab initio molecular dynamics simulations to study chemical reactions between NH3, H2O, H2, and CO at pressures (P) and temperatures (T) approximating the conditions of Earth’s upper mantle (i.e., 10–13 GPa, 1000–1400 K). Contrary to the previous assumptions that large organic molecules might readily disintegrate in aqueous solutions at extreme P–T conditions, we found that many organic compounds formed without any catalysts and persisted in C–H–O–N fluids under these extreme conditions, including glycine, ribose, urea, and uracil-like molecules. Particularly, our free-energy calculations showed that the C–N bond is thermodynamically stable at 10 GPa and 1400 K. Moreover, while the pyranose (six-membered ring) form of ribose is more stable than the furanose (five-membered ring) form at ambient conditions, we found that the formation of the five-membered-ring form of ribose is thermodynamically more favored at extreme conditions, which is consistent with the exclusive incorporation of β-d-ribofuranose in RNA. We have uncovered a previously unexplored pathway through which the crucial biomolecules could be abiotically synthesized from geofluids in the deep interior of Earth and other planets, and these formed biomolecules could potentially contribute to the early stage of the emergence of life.
期刊介绍:
The flagship journal of the American Chemical Society, known as the Journal of the American Chemical Society (JACS), has been a prestigious publication since its establishment in 1879. It holds a preeminent position in the field of chemistry and related interdisciplinary sciences. JACS is committed to disseminating cutting-edge research papers, covering a wide range of topics, and encompasses approximately 19,000 pages of Articles, Communications, and Perspectives annually. With a weekly publication frequency, JACS plays a vital role in advancing the field of chemistry by providing essential research.