利用机器学习模型预测通过超临界流体萃取获得的微藻脂质概况。

IF 3.8 3区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Frontiers in Chemistry Pub Date : 2024-10-25 eCollection Date: 2024-01-01 DOI:10.3389/fchem.2024.1480887
Juan David Rangel Pinto, Jose L Guerrero, Lorena Rivera, María Paula Parada-Pinilla, Mónica P Cala, Gina López, Andrés Fernando González Barrios
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引用次数: 0

摘要

本研究采用机器学习模型来预测微藻 Galdieria sp. USBA-GBX-832 在不同温度(40、50、60°C)、压力(150、250 bar)和乙醇流量(0.6、0.9 mL min-1)条件下的超临界流体萃取(SFE)脂质谱。使用 33 个自变量训练了 6 个机器学习回归模型:29 个来自 RD-Kit 分子描述符,3 个来自提取条件,以及无限稀释活性系数(IDAC)。脂质体表征分析确定了 139 个特征,注释了 89 种用作模型条目的脂质,主要是甘油磷脂和甘油酯。研究人员提出了一种使用无监督学习方法从脂质体分析中选择代表性脂质的方法,并将这些结果与使用 COSMO-SAC-HB2 模型进行的 Tanimoto 评分和 IDAC 计算结果进行了比较。基于决策树的模型,尤其是 XGBoost,表现优于其他模型(RMSE:0.035、0.095、0.065,判定系数 (R2):0.971、0.990、0.990):训练、测试和实验验证的 RMSE 分别为 0.035、0.095、0.065,判定系数 (R2) 分别为 0.971、0.933、0.946),能准确预测未见条件下的血脂曲线。机器学习方法为优化 SFE 条件提供了一种经济有效的方法,并适用于其他生物样本。
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Predicting the microalgae lipid profile obtained by supercritical fluid extraction using a machine learning model.

In this study a Machine Learning model was employed to predict the lipid profile from supercritical fluid extraction (SFE) of microalgae Galdieria sp. USBA-GBX-832 under different temperature (40, 50, 60°C), pressure (150, 250 bar), and ethanol flow (0.6, 0.9 mL min-1) conditions. Six machine learning regression models were trained using 33 independent variables: 29 from RD-Kit molecular descriptors, three from the extraction conditions, and the infinite dilution activity coefficient (IDAC). The lipidomic characterization analysis identified 139 features, annotating 89 lipids used as the entries of the model, primarily glycerophospholipids and glycerolipids. It was proposed a methodology for selecting the representative lipids from the lipidomic analysis using an unsupervised learning method, these results were compared with Tanimoto scores and IDAC calculations using COSMO-SAC-HB2 model. The models based on decision trees, particularly XGBoost, outperformed others (RMSE: 0.035, 0.095, 0.065 and coefficient of determination (R2): 0.971, 0.933, 0.946 for train, test and experimental validation, respectively), accurately predicting lipid profiles for unseen conditions. Machine Learning methods provide a cost-effective way to optimize SFE conditions and are applicable to other biological samples.

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来源期刊
Frontiers in Chemistry
Frontiers in Chemistry Chemistry-General Chemistry
CiteScore
8.50
自引率
3.60%
发文量
1540
审稿时长
12 weeks
期刊介绍: Frontiers in Chemistry is a high visiblity and quality journal, publishing rigorously peer-reviewed research across the chemical sciences. Field Chief Editor Steve Suib at the University of Connecticut is supported by an outstanding Editorial Board of international researchers. This multidisciplinary open-access journal is at the forefront of disseminating and communicating scientific knowledge and impactful discoveries to academics, industry leaders and the public worldwide. Chemistry is a branch of science that is linked to all other main fields of research. The omnipresence of Chemistry is apparent in our everyday lives from the electronic devices that we all use to communicate, to foods we eat, to our health and well-being, to the different forms of energy that we use. While there are many subtopics and specialties of Chemistry, the fundamental link in all these areas is how atoms, ions, and molecules come together and come apart in what some have come to call the “dance of life”. All specialty sections of Frontiers in Chemistry are open-access with the goal of publishing outstanding research publications, review articles, commentaries, and ideas about various aspects of Chemistry. The past forms of publication often have specific subdisciplines, most commonly of analytical, inorganic, organic and physical chemistries, but these days those lines and boxes are quite blurry and the silos of those disciplines appear to be eroding. Chemistry is important to both fundamental and applied areas of research and manufacturing, and indeed the outlines of academic versus industrial research are also often artificial. Collaborative research across all specialty areas of Chemistry is highly encouraged and supported as we move forward. These are exciting times and the field of Chemistry is an important and significant contributor to our collective knowledge.
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