形态学和分子数据在根瘤菌科进化、种群遗传学和分类学研究中的应用。

Advances in marine biology Pub Date : 2024-01-01 Epub Date: 2024-09-24 DOI:10.1016/bs.amb.2024.09.001
Edgar Gamero-Mora, Jonathan W Lawley, Maximiliano M Maronna, Sérgio N Stampar, Adriana Muhlia-Almazan, André C Morandini
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引用次数: 0

摘要

20 世纪 70 年代后,以形态学方法为基础的根瘤菌科研究得到了新技术的加强和多样化,包括系统发生分析方法的发展、聚合酶链式反应的兴起以及不同测序技术的出现。在此,我们总结了形态学和分子数据对根瘤菌科分类和系统发育关系研究的贡献,以及分子数据在种群、物种和超种水平研究中的应用。在根瘤藻科系统学研究的整个历史中,形态学数据在进行系统发生推断时一直被忽视,这反映在缺乏基于成体水母表型特征的根瘤藻科内类群的系统发生分析。关于分子数据,GenBank 中有大约 3 200 个核苷酸序列,主要用于发现、划分、描述和鉴定物种。分子方法还可通过 qPCR 和环境 DNA 代谢编码进行物种监测,以及揭示水母种群的分布和遗传多样性,从而揭示可食用水母种群的引入事件、保护和健康状况。核苷酸序列也是发展系统发育假说的关键,这些假说是研究腔肠动物形态、生态和行为特征的起源和多样化的基础;然而,尽管取得了进展,系统发育的不确定性仍然存在,特别是在以前已知的无尾水母超科(Inscapulatae)内。根瘤菌科研究的未来方向包括生成被忽视类群的分子和形态数据,这是了解根瘤菌科进化的黄金机会。
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Morphological and molecular data in the study of the evolution, population genetics and taxonomy of Rhizostomeae.

Rhizostomeae research based on morphological approaches was reinforced and diversified by new techniques after the 1970s, including developing methodologies for phylogenetic analysis, the rise of the polymerase chain reaction, and the emergence of different sequencing technologies. Here, we summarize the contribution of morphological and molecular data to the study of the classification and phylogenetic relationships of Rhizostomeae in addition to the use of molecular data in studies at the population, species, and supraspecific levels. Throughout the history of the study of the Rhizostomeae systematics, morphological data have been neglected when it comes to phylogenetic inferences, which is reflected in the lack of a phylogenetic analysis of the taxa within Rhizostomeae based on phenotypic characters of the adult medusa. Concerning molecular data, ca. 3,200 nucleotide sequences are available in GenBank and are mainly used for discovering, delimiting, describing, and identifying species. Molecular approaches have also allowed species monitoring by qPCR and metabarcoding of environmental DNA, as well as unveiling the distribution and genetic diversity of jellyfish populations, shedding light on introduction events, conservation, and health of edible jellyfish stocks. Nucleotide sequences have also been key for the development of phylogenetic hypotheses that serve as basis for investigations on the origin and diversification of morphological, ecological, and behavioral traits within Cnidaria; however, despite the progress achieved, phylogenetic uncertainty still exists, especially within the formerly known superfamily Inscapulatae. Future directions in Rhizostomeae research involve generating molecular and morphological data of neglected taxa, which represents a golden opportunity to understand the evolution of Rhizostomeae.

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