蝉的最小年龄树:最近地质年代的隐性物种和指数级增长的碱基替换率。

Q2 Pharmacology, Toxicology and Pharmaceutics F1000Research Pub Date : 2024-10-09 eCollection Date: 2022-01-01 DOI:10.12688/f1000research.76068.4
Soichi Osozawa, John Wakabayashi
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引用次数: 0

摘要

继 Marshall 等人(2018 年)、Łukasik 等人(2018 年)、Simon 等人(2019 年)、Price 等人(2019 年)和 Hill 等人(2021 年)最近发表全球蝉数据之后,我们开发了一棵新的时间校准树,其中主要包含地方性蝉数据和一些隐性琉球群岛蝉数据。 使用 BEAST v1. X 软件和宽松的时钟模型分析了总共 352 个标本。我们的时间树表明,Tettigarctidae 的蝉基系可追溯到 200.63 Ma,Derotettiginae 是其次古老的基系,为 99.2 Ma。Tibicininae是其余的Tettigomyiinae亚科、Cicadettinae亚科和Cicadidae亚科的姊妹科,它们的物种水平分化和辐射始于40.57 Ma。蝉科支系由具有旁系关系的特定支系组成,沧海桑田和适应性辐射在各支系中产生了许多隐蔽物种。我们估算了碱基替换率与年龄的函数关系,结果强烈显示碱基替换率在近代地质年代呈指数增长。随之而来的蝉类生物多样性的增加,包括琉球群岛及其周边地区隐蔽物种的产生,可能是由 C4 禾本科植物的产生和传播以及同时发生的第四纪气候变化所驱动的。
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Cicada minimum age tree: Cryptic speciation and exponentially increasing base substitution rates in recent geologic time.

We developed a new time-calibrated tree incorporating primarily endemic along with some cryptic Ryukyu islands cicada data, following the recent publication of global cicada data by Marshall et al. (2018), Łukasik et al. (2018), Simon et al. (2019), Price et al. (2019), and Hill et al. (2021).  A total of 352 specimens were analyzed using BEAST v1. X software with a relaxed clock model. Fossil calibrations as old as Triassic were adopted largely following Johnson et al. (2018) and Moulds (2018), and a Quaternary geological event calibration was adopted following Osozawa et al. (2012, 2021b) and input into BEAST v1. X. Our timetree suggests that Tettigarctidae had a cicada basal lineage as old as 200.63 Ma, with Derotettiginae the next oldest lineage at 99.2 Ma. Tibicininae is a sister of the remaining subfamilies of Tettigomyiinae, Cicadettinae, and Cicadidae, and their species level differentiation and radiation began at 40.57 Ma. The Cicadinae clade consists of specific tribes with paraphyletic relationship, and the vicariance and adaptive radiation generated many cryptic species in each tribe. We estimated base substitution rate as a function of age, and the result strongly indicates an exponential increase of base substitution rate in recent geologic time. The consequent increase in cicada biodiversity, including generation of cryptic species in the Ryukyu Islands and surroundings, may have been driven by the generation and spreading of C4 grasses and coeval Quaternary climate change.

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来源期刊
F1000Research
F1000Research Pharmacology, Toxicology and Pharmaceutics-Pharmacology, Toxicology and Pharmaceutics (all)
CiteScore
5.00
自引率
0.00%
发文量
1646
审稿时长
1 weeks
期刊介绍: F1000Research publishes articles and other research outputs reporting basic scientific, scholarly, translational and clinical research across the physical and life sciences, engineering, medicine, social sciences and humanities. F1000Research is a scholarly publication platform set up for the scientific, scholarly and medical research community; each article has at least one author who is a qualified researcher, scholar or clinician actively working in their speciality and who has made a key contribution to the article. Articles must be original (not duplications). All research is suitable irrespective of the perceived level of interest or novelty; we welcome confirmatory and negative results, as well as null studies. F1000Research publishes different type of research, including clinical trials, systematic reviews, software tools, method articles, and many others. Reviews and Opinion articles providing a balanced and comprehensive overview of the latest discoveries in a particular field, or presenting a personal perspective on recent developments, are also welcome. See the full list of article types we accept for more information.
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