蛋白质组学研究发现 Aurora-A 通过多种剪接因子介导了对替代剪接的调控。

IF 4 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Biological Chemistry Pub Date : 2024-11-15 DOI:10.1016/j.jbc.2024.108000
Arun Prasath Damodaran, Olivia Gavard, Jean-Philippe Gagné, Malgorzata Ewa Rogalska, Amit K Behera, Estefania Mancini, Giulia Bertolin, Thibault Courtheoux, Bandana Kumari, Justine Cailloce, Agnès Mereau, Guy G Poirier, Juan Valcárcel, Thomas Gonatopoulos-Pournatzis, Erwan Watrin, Claude Prigent
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引用次数: 0

摘要

细胞周期调节剂 Aurora-A 激酶是癌症疗法的一个诱人靶点,但抑制它也会产生毒副作用。为了更细致地了解极光-A的功能,我们应用枪式蛋白质组学鉴定了407个特定的蛋白质伙伴,包括几个剪接因子。我们发现 Aurora-A 定位于核斑点(剪接蛋白的仓库),这证明了它在替代剪接中的作用。Aurora-A 在体外和体内都与剪接因子相互作用并使其磷酸化,这表明它通过调节这些剪接因子的活性来调节替代剪接。一致的是,Aurora-A 抑制显著影响了 505 个基因的替代剪接,RNA 主题分析显示 Aurora-A 相互作用的剪接因子富集。此外,我们还观察到受 Aurora-A 调控的剪接事件与受其相互作用剪接因子调控的剪接事件之间存在明显的正相关。一个有趣的例子是 CLK1 第 4 外显子,它似乎是通过 SRSF3 受 Aurora-A 调节的。总之,我们的研究结果突显了 Aurora-A 在调节替代剪接中的广泛作用。
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Proteomic study identifies Aurora-A mediated regulation of alternative splicing through multiple splicing factors.

The cell cycle regulator Aurora-A kinase presents an attractive target for cancer therapies, though its inhibition is also associated with toxic side effects. To gain a more nuanced understanding of Aurora-A function, we applied shotgun proteomics to identify 407 specific protein partners, including several splicing factors. Supporting a role in alternative splicing, we found that Aurora-A localizes to nuclear speckles, the storehouse of splicing proteins. Aurora-A interacts with and phosphorylates splicing factors both in vitro and in vivo, suggesting that it regulates alternative splicing by modulating the activity of these splicing factors. Consistently, Aurora-A inhibition significantly impacts the alternative splicing of 505 genes, with RNA motif analysis revealing an enrichment for Aurora-A interacting splicing factors. Additionally, we observed a significant positive correlation between the splicing events regulated by Aurora-A and those modulated by its interacting splicing factors. An interesting example is represented by CLK1 exon 4, which appears to be regulated by Aurora-A through SRSF3. Collectively, our findings highlight a broad role of Aurora-A in the regulation of alternative splicing.

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Journal of Biological Chemistry
Journal of Biological Chemistry Biochemistry, Genetics and Molecular Biology-Biochemistry
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期刊介绍: The Journal of Biological Chemistry welcomes high-quality science that seeks to elucidate the molecular and cellular basis of biological processes. Papers published in JBC can therefore fall under the umbrellas of not only biological chemistry, chemical biology, or biochemistry, but also allied disciplines such as biophysics, systems biology, RNA biology, immunology, microbiology, neurobiology, epigenetics, computational biology, ’omics, and many more. The outcome of our focus on papers that contribute novel and important mechanistic insights, rather than on a particular topic area, is that JBC is truly a melting pot for scientists across disciplines. In addition, JBC welcomes papers that describe methods that will help scientists push their biochemical inquiries forward and resources that will be of use to the research community.
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