构建二硫化相关lncRNAs风险模型以预测肺腺癌预后并进行免疫浸润分析

IF 1.2 4区 医学 Q2 MEDICINE, GENERAL & INTERNAL Pakistan Journal of Medical Sciences Pub Date : 2024-11-01 DOI:10.12669/pjms.40.10.9025
Jiaming Liu, Hao Nie, Wenji Du, Wei Song
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引用次数: 0

摘要

目的根据与二硫化相关的 LncRNAs 建立风险模型,以预测肺腺癌(LUAD)的预后并评估免疫浸润:本研究采用生物信息学方法。研究于 2023 年 3 月 29 日至 7 月 1 日在广州中医药大学进行。LUAD 的转录组数据来自 TCGA 数据库。通过共表达分析初步筛选出与二硫化血症相关的LncRNA,再通过Lasso回归和Cox回归筛选出LncRNA。随后,构建了预后预测模型。为了评估模型,采用了生存分析、受试者操作特征曲线和校准曲线。为了评估肿瘤微环境,我们使用了 "estimate "软件包,并使用了 "ggpubr "软件包来可视化这些变化。此外,我们还使用了 CIBERSORT 来检测免疫细胞浸润的丰度:结果:我们利用五个 LncRNA 构建了一个预后预测模型。高风险组的总生存期和无进展生存期较短(PCi:0.654-0.754)。GSEA分析显示,高风险组与细胞周期通路和类固醇激素生物合成通路相关,而低风险组与造血细胞通路和异体移植排斥通路相关。免疫细胞浸润分析表明,预后模型与活化 T 细胞 CD4 记忆、T 细胞 CD8 等相关:二硫化相关LncRNAs风险模型可预测LUAD的预后并评估免疫浸润,为LUAD的治疗提供了新的方向。
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Construction of a disulfidptosis-associated lncRNAs risk model to predict prognosis and immuno-infiltration analysis of lung adenocarcinoma.

Objective: To develop a risk model based on LncRNAs associated with disulfidptosis to forecast the prognosis and assess immune infiltration of Lung adenocarcinoma (LUAD).

Methods: This study employed a bioinformatics approach. The study was conducted from March 29, 2023 and concluded on July 1, 2023 at Guangzhou University of Chinese Medicine, Guangzhou, China. Transcriptomic data specific to LUAD were collected from TCGA database. Disulfidptosis-related LncRNAs were preliminarily screened using co-expression analysis, followed by screening using Lasso regression and Cox regression to identify LncRNAs. Subsequently, prognostic prediction models were constructed. To assess the model, survival analysis, subject operating characteristic curves, and calibration curves were employed. To evaluate the tumor microenvironment, the "estimate" package was used, while the "ggpubr" package was utilized to visualize the variations. Additionally, we employed CIBERSORT to examine immune cell infiltration abundance.

Results: A prognostic prediction model was constructed using five LncRNAs. The high-risk group displayed a shorter overall survival and progression-free survival (P<0.05). The concordance index was calculated as 0.704 (95.

Ci: 0.654-0.754). GSEA analysis reveals that high risk group is associated with the cell cycle pathway and steroid hormone biosynthesis pathway, while the low-risk group is associated with hematopoietic cell pathway and allograft rejection pathway. Immune cell infiltration analysis indicated associations between the prognostic model and activated T cells CD4 memory, T cells CD8, etc.

Conclusions: The risk model of Disulfidptosis-related LncRNAs can predict the prognosis of LUAD and evaluate the immune infiltration, providing a new direction for the treatment of LUAD.

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来源期刊
Pakistan Journal of Medical Sciences
Pakistan Journal of Medical Sciences 医学-医学:内科
CiteScore
4.10
自引率
9.10%
发文量
363
审稿时长
3-6 weeks
期刊介绍: It is a peer reviewed medical journal published regularly since 1984. It was previously known as quarterly "SPECIALIST" till December 31st 1999. It publishes original research articles, review articles, current practices, short communications & case reports. It attracts manuscripts not only from within Pakistan but also from over fifty countries from abroad. Copies of PJMS are sent to all the import medical libraries all over Pakistan and overseas particularly in South East Asia and Asia Pacific besides WHO EMRO Region countries. Eminent members of the medical profession at home and abroad regularly contribute their write-ups, manuscripts in our publications. We pursue an independent editorial policy, which allows an opportunity to the healthcare professionals to express their views without any fear or favour. That is why many opinion makers among the medical and pharmaceutical profession use this publication to communicate their viewpoint.
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