1,2-双(4-吡啶基)乙烯在乙醇溶液中的构象变化和自我聚集的证据

IF 4 2区 化学 Q2 CHEMISTRY, PHYSICAL Journal of Molecular Structure Pub Date : 2024-11-12 DOI:10.1016/j.molstruc.2024.140731
V. Lamprou , C. Kouderis , A. Tryfon , T.A. Kabanos , A.G. Kalampounias
{"title":"1,2-双(4-吡啶基)乙烯在乙醇溶液中的构象变化和自我聚集的证据","authors":"V. Lamprou ,&nbsp;C. Kouderis ,&nbsp;A. Tryfon ,&nbsp;T.A. Kabanos ,&nbsp;A.G. Kalampounias","doi":"10.1016/j.molstruc.2024.140731","DOIUrl":null,"url":null,"abstract":"<div><div>In this work, we report on a concentration and temperature dependent study of the 1,2-Bis(4-pyridyl)ethylene (BPE) – ethanol solutions by means of ultrasonic relaxation spectroscopy. The results revealed two distinct relaxation processes that follow Debye-type frequency dependence. Despite the presence of both processes in the full concentration range studied, the low-frequency relaxation process, related to conformational change between the trans- and gauche-BPE conformers, dominates the acoustic spectra in the low-concentration range, while diminishes at higher concentrations with a parallel enhancement of the high-frequency relaxation process, which is attributed to the self-association of BPE molecules. Quantum mechanical calculations were performed to investigate the energetics of the trans- and gauche-conformers. The trans-species was found more thermodynamically stable than the gauche-conformer. By applying the Synchronous Transit-Guided Quasi-Newton (STQN) methodology, we confirmed the presence of a single transition structure. From the temperature dependence of the acoustic properties, we estimated the activation enthalpy and the enthalpy difference between the two conformers. Density Functional Theory (DFT) calculations have been applied to attain the corresponding enthalpies that were found close to the experimental values. Molecular docking calculations established the self-aggregation mechanism between BPE monomers forming three types of dimeric units, namely the trans-trans, the gauche-gauche and the trans-gauche dimer species with the latter found to be the most thermodynamically favorable. The concentration dependence of the sound velocity, mass density and shear viscosity evidenced the formation of BPE aggregates. From the temperature dependence of the acoustic spectra, the thermodynamic properties of the self-aggregation mechanism of BPE were also determined. Based on the vibrational spectroscopic data, the population of the gauche conformers was found to increase with concentration at the expense of the population of the trans conformers. From the study of the vibrational properties of the system in the short-rage order, we cannot exclude the presence of a specific dimer type in the overall structure. Nevertheless, regarding to the binding score of the trans-gauche dimer (-1.25 kcal/mol), this species is the most thermodynamically stable and most likely its population is higher in dense solutions relative to the other two dimer species.</div></div>","PeriodicalId":16414,"journal":{"name":"Journal of Molecular Structure","volume":"1323 ","pages":"Article 140731"},"PeriodicalIF":4.0000,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Evidence of conformational changes and self-aggregation of 1,2-Bis(4-pyridyl)ethylene in solutions with ethanol\",\"authors\":\"V. Lamprou ,&nbsp;C. Kouderis ,&nbsp;A. Tryfon ,&nbsp;T.A. Kabanos ,&nbsp;A.G. Kalampounias\",\"doi\":\"10.1016/j.molstruc.2024.140731\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>In this work, we report on a concentration and temperature dependent study of the 1,2-Bis(4-pyridyl)ethylene (BPE) – ethanol solutions by means of ultrasonic relaxation spectroscopy. The results revealed two distinct relaxation processes that follow Debye-type frequency dependence. Despite the presence of both processes in the full concentration range studied, the low-frequency relaxation process, related to conformational change between the trans- and gauche-BPE conformers, dominates the acoustic spectra in the low-concentration range, while diminishes at higher concentrations with a parallel enhancement of the high-frequency relaxation process, which is attributed to the self-association of BPE molecules. Quantum mechanical calculations were performed to investigate the energetics of the trans- and gauche-conformers. The trans-species was found more thermodynamically stable than the gauche-conformer. By applying the Synchronous Transit-Guided Quasi-Newton (STQN) methodology, we confirmed the presence of a single transition structure. From the temperature dependence of the acoustic properties, we estimated the activation enthalpy and the enthalpy difference between the two conformers. Density Functional Theory (DFT) calculations have been applied to attain the corresponding enthalpies that were found close to the experimental values. Molecular docking calculations established the self-aggregation mechanism between BPE monomers forming three types of dimeric units, namely the trans-trans, the gauche-gauche and the trans-gauche dimer species with the latter found to be the most thermodynamically favorable. The concentration dependence of the sound velocity, mass density and shear viscosity evidenced the formation of BPE aggregates. From the temperature dependence of the acoustic spectra, the thermodynamic properties of the self-aggregation mechanism of BPE were also determined. Based on the vibrational spectroscopic data, the population of the gauche conformers was found to increase with concentration at the expense of the population of the trans conformers. From the study of the vibrational properties of the system in the short-rage order, we cannot exclude the presence of a specific dimer type in the overall structure. Nevertheless, regarding to the binding score of the trans-gauche dimer (-1.25 kcal/mol), this species is the most thermodynamically stable and most likely its population is higher in dense solutions relative to the other two dimer species.</div></div>\",\"PeriodicalId\":16414,\"journal\":{\"name\":\"Journal of Molecular Structure\",\"volume\":\"1323 \",\"pages\":\"Article 140731\"},\"PeriodicalIF\":4.0000,\"publicationDate\":\"2024-11-12\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Molecular Structure\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0022286024032393\",\"RegionNum\":2,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Molecular Structure","FirstCategoryId":"92","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0022286024032393","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0

摘要

在这项研究中,我们利用超声弛豫光谱法对 1,2-双(4-吡啶基)乙烯(BPE)-乙醇溶液进行了浓度和温度相关性研究。研究结果表明,有两个不同的弛豫过程遵循德拜型频率依赖性。尽管在所研究的整个浓度范围内都存在这两个过程,但在低浓度范围内,低频弛豫过程(与反式和高式 BPE 构象之间的构象变化有关)在声谱中占主导地位,而在较高浓度时,高频弛豫过程会减弱并同时增强,这归因于 BPE 分子的自结合。我们进行了量子力学计算,以研究反式和凹凸式构象的能量学。结果发现,反式构象的热力学稳定性要高于普通构象。通过应用同步过渡引导准牛顿(STQN)方法,我们证实了单一过渡结构的存在。根据声学特性的温度依赖性,我们估算出了两种构象之间的活化焓和焓差。应用密度泛函理论(DFT)计算得出的相应焓值与实验值相近。分子对接计算确定了 BPE 单体之间的自聚集机制,形成了三种类型的二聚体单元,即反式-反式、反式-高切和反式-高切二聚体,其中后者在热力学上最为有利。声速、质量密度和剪切粘度的浓度依赖性证明了 BPE 聚集体的形成。根据声谱的温度依赖性,还确定了 BPE 自聚集机制的热力学性质。根据振动光谱数据,发现随着浓度的增加,高顺式构象体的数量增加,而反式构象体的数量减少。通过对该系统短程振动特性的研究,我们不能排除在整体结构中存在特定的二聚体类型。不过,从反式高切二聚体的结合得分(-1.25 kcal/mol)来看,这种二聚体在热力学上是最稳定的,而且相对于其他两种二聚体,它在稠密溶液中的数量很可能更多。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

摘要图片

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Evidence of conformational changes and self-aggregation of 1,2-Bis(4-pyridyl)ethylene in solutions with ethanol
In this work, we report on a concentration and temperature dependent study of the 1,2-Bis(4-pyridyl)ethylene (BPE) – ethanol solutions by means of ultrasonic relaxation spectroscopy. The results revealed two distinct relaxation processes that follow Debye-type frequency dependence. Despite the presence of both processes in the full concentration range studied, the low-frequency relaxation process, related to conformational change between the trans- and gauche-BPE conformers, dominates the acoustic spectra in the low-concentration range, while diminishes at higher concentrations with a parallel enhancement of the high-frequency relaxation process, which is attributed to the self-association of BPE molecules. Quantum mechanical calculations were performed to investigate the energetics of the trans- and gauche-conformers. The trans-species was found more thermodynamically stable than the gauche-conformer. By applying the Synchronous Transit-Guided Quasi-Newton (STQN) methodology, we confirmed the presence of a single transition structure. From the temperature dependence of the acoustic properties, we estimated the activation enthalpy and the enthalpy difference between the two conformers. Density Functional Theory (DFT) calculations have been applied to attain the corresponding enthalpies that were found close to the experimental values. Molecular docking calculations established the self-aggregation mechanism between BPE monomers forming three types of dimeric units, namely the trans-trans, the gauche-gauche and the trans-gauche dimer species with the latter found to be the most thermodynamically favorable. The concentration dependence of the sound velocity, mass density and shear viscosity evidenced the formation of BPE aggregates. From the temperature dependence of the acoustic spectra, the thermodynamic properties of the self-aggregation mechanism of BPE were also determined. Based on the vibrational spectroscopic data, the population of the gauche conformers was found to increase with concentration at the expense of the population of the trans conformers. From the study of the vibrational properties of the system in the short-rage order, we cannot exclude the presence of a specific dimer type in the overall structure. Nevertheless, regarding to the binding score of the trans-gauche dimer (-1.25 kcal/mol), this species is the most thermodynamically stable and most likely its population is higher in dense solutions relative to the other two dimer species.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Journal of Molecular Structure
Journal of Molecular Structure 化学-物理化学
CiteScore
7.10
自引率
15.80%
发文量
2384
审稿时长
45 days
期刊介绍: The Journal of Molecular Structure is dedicated to the publication of full-length articles and review papers, providing important new structural information on all types of chemical species including: • Stable and unstable molecules in all types of environments (vapour, molecular beam, liquid, solution, liquid crystal, solid state, matrix-isolated, surface-absorbed etc.) • Chemical intermediates • Molecules in excited states • Biological molecules • Polymers. The methods used may include any combination of spectroscopic and non-spectroscopic techniques, for example: • Infrared spectroscopy (mid, far, near) • Raman spectroscopy and non-linear Raman methods (CARS, etc.) • Electronic absorption spectroscopy • Optical rotatory dispersion and circular dichroism • Fluorescence and phosphorescence techniques • Electron spectroscopies (PES, XPS), EXAFS, etc. • Microwave spectroscopy • Electron diffraction • NMR and ESR spectroscopies • Mössbauer spectroscopy • X-ray crystallography • Charge Density Analyses • Computational Studies (supplementing experimental methods) We encourage publications combining theoretical and experimental approaches. The structural insights gained by the studies should be correlated with the properties, activity and/ or reactivity of the molecule under investigation and the relevance of this molecule and its implications should be discussed.
期刊最新文献
The effect of electron-withdrawing groups on the binding properties of bisphenol A to DNA: Insights from multi-spectral, electrochemical, and molecular docking Insight into the effect of terminal aromatic group on the mesomorphic, emissive and stimuli-responsive properties of cyanostyrene-based derivatives with multiple applications Unraveling the noncovalent interactions in a organic crystal using Quantum theory of atoms in molecules Topological characterization, entropy measures and prediction of properties of Iridium cored dendrimer Unveiling quorum sensing mechanisms: Computational docking and dynamics of bacterial receptors and ligands
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1